| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 12909 |
| Family | GH28 |
| Protein Properties | Length: 376 Molecular Weight: 39448 Isoelectric Point: 6.0916 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 27 | 363 | 0 |
| QDACKSPDATLLIPGGKTFLIAQVSLQGPCKPNTKIRIEGNIHAPDASSWSNSNSAPWIQIKNLEGLKVEATGTLDGNGTSWWSRACKPTPGSTSCRKAP TSIEFNTVKNLRVNGLEVVNSPRMHVNFNGCQHVAAQWLRINSPGNSPNTDGIHITNSQDVVIKYAMVAAGDDCVSIVGGSSNIDVSSIVCGPGHGISIG SLGGGDVVSGVRVRNANLIGTTNGVRIKSYKNGHGAVSDVSFEDVRMDEVANPIIIDQAYCDAHEHDCGAEAAAEEVSGVSISGVRYKNISGTSKTKTAI TLRCSQVVGCDGIELDNVEITQATKGANADARCSNAY | |||
| Full Sequence |
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| Protein Sequence Length: 376 Download |
| TTFNLQDYGA KGDGVTDDTQ ALERAWQDAC KSPDATLLIP GGKTFLIAQV SLQGPCKPNT 60 KIRIEGNIHA PDASSWSNSN SAPWIQIKNL EGLKVEATGT LDGNGTSWWS RACKPTPGST 120 SCRKAPTSIE FNTVKNLRVN GLEVVNSPRM HVNFNGCQHV AAQWLRINSP GNSPNTDGIH 180 ITNSQDVVIK YAMVAAGDDC VSIVGGSSNI DVSSIVCGPG HGISIGSLGG GDVVSGVRVR 240 NANLIGTTNG VRIKSYKNGH GAVSDVSFED VRMDEVANPI IIDQAYCDAH EHDCGAEAAA 300 EEVSGVSISG VRYKNISGTS KTKTAITLRC SQVVGCDGIE LDNVEITQAT KGANADARCS 360 NAYGVAGKNV FPESCL 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-64 | 30 | 362 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 3.0e-65 | 3 | 376 | 381 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 1.0e-69 | 1 | 375 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-76 | 1 | 373 | 379 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-88 | 3 | 376 | 379 | + Probable polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAA32914.1 | 0 | 1 | 376 | 83 | 453 | polygalacturonase [Persea americana] |
| GenBank | AAF61444.1 | 0 | 1 | 376 | 61 | 433 | AF138858_1 polygalacturonase [Solanum lycopersicum] |
| RefSeq | NP_001140231.1 | 0 | 3 | 375 | 64 | 438 | hypothetical protein LOC100272271 [Zea mays] |
| RefSeq | XP_002463688.1 | 0 | 1 | 376 | 60 | 433 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
| RefSeq | XP_002466242.1 | 0 | 3 | 375 | 75 | 448 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-26 | 99 | 347 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 5e-20 | 81 | 330 | 63 | 306 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 5e-20 | 81 | 330 | 63 | 306 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 5e-20 | 81 | 330 | 63 | 306 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 1e-19 | 100 | 361 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW479564 | 330 | 10 | 329 | 0 |
| GO844129 | 340 | 10 | 336 | 0 |
| EH769878 | 256 | 35 | 287 | 0 |
| DV135481 | 288 | 12 | 287 | 0 |
| EE091344 | 250 | 100 | 346 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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