| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 13694 |
| Family | PL1 |
| Protein Properties | Length: 232 Molecular Weight: 25591.9 Isoelectric Point: 8.8899 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 55 | 231 | 0 |
| ITFSKTMIIQLREMLWIRSDTTIDGRGSNITITGRSIVLAGVTNVILHNFQINSVPETDTVHVFAGSKRIWIDHLTSFSGSEGLVSVVQGSTDVTISNCY LSNRDFNMLLGASDSDRQDSVMRVTVFRNWFRDSTQRMPHCRFGYCHVVNNLYSNWGYYALGARVTATILSEFNVFV | |||
| Full Sequence |
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| Protein Sequence Length: 232 Download |
| RALPSCAYGF AGGLTGGANG RSYVVTRPDD NPTDPQKGSL RYGVSLNPKS GGVWITFSKT 60 MIIQLREMLW IRSDTTIDGR GSNITITGRS IVLAGVTNVI LHNFQINSVP ETDTVHVFAG 120 SKRIWIDHLT SFSGSEGLVS VVQGSTDVTI SNCYLSNRDF NMLLGASDSD RQDSVMRVTV 180 FRNWFRDSTQ RMPHCRFGYC HVVNNLYSNW GYYALGARVT ATILSEFNVF VA 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-30 | 68 | 230 | 178 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-42 | 73 | 230 | 180 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-51 | 71 | 232 | 177 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY99626.1 | 0 | 1 | 232 | 111 | 360 | hypothetical protein OsI_21605 [Oryza sativa Indica Group] |
| RefSeq | XP_001753505.1 | 0 | 1 | 232 | 3 | 235 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001761530.1 | 0 | 1 | 232 | 10 | 242 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001767336.1 | 0 | 1 | 232 | 17 | 268 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001767377.1 | 0 | 1 | 232 | 31 | 282 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1.96182e-44 | 3 | 232 | 21 | 270 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1.96182e-44 | 3 | 232 | 21 | 270 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pcl_A | 6e-20 | 12 | 230 | 16 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 5e-18 | 66 | 230 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 3e-17 | 50 | 208 | 45 | 214 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| JG594056 | 167 | 30 | 195 | 0 |
| BJ867266 | 139 | 93 | 231 | 0 |
| BJ867600 | 138 | 94 | 231 | 0 |
| DC950609 | 128 | 105 | 232 | 0 |
| CO553753 | 229 | 25 | 232 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Physcomitrella patens | Pp1s9_110V6.1 | ||||
| Picea abies | MA_20455g0010 | ||||
| Selaginella moellendorffii | 115361 | 92002 | 13606 | ||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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