Basic Information | |
---|---|
Species | Ricinus communis |
Cazyme ID | 27504.m000613 |
Family | GH28 |
Protein Properties | Length: 477 Molecular Weight: 52731.4 Isoelectric Point: 9.1193 |
Chromosome | Chromosome/Scaffold: 27504 Start: 29640 End: 32647 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 107 | 441 | 0 |
KAACKVPGATVEIPAEFKFLIKPITLQGPCMPHLVLQIDGTVLAPPEVGSWPKSSLFQWFNFKWVHDFTIQGTGSVNGQGFYWWTPSNVYFIQKRFKHIP DMKPTALRFYASYNVTVRNIEIINSPQCHLKFDNSKGIKVNNITISSPENSPNTDGIHLQNTQDVEIQHSNIGTGDDCISIQTGCSNIHVHHINCGPGHG ISLGGLGKDKSVACVSNIVVEKISLHNTLAGARIKTWQGGLGSVKNVSFSNIQVSDVKYPIIIDQFYCDKHICKNQTEAVAISGVKFDQIIGSYITQPIH LACSKDVPCIDVDLIDIQLKPSPGYRSFRQALCWN |
Full Sequence |
---|
Protein Sequence Length: 477 Download |
MKKNKNIPRL FFIFVMIAAF TMFTMISVDA RKHHHNKKSK SHKHIKDRSG NGNNAPDSAT 60 VPSPAPAPLP HYGYSYPTQS NIFDVLSFGA KGDGVSDDSK ALLAAWKAAC KVPGATVEIP 120 AEFKFLIKPI TLQGPCMPHL VLQIDGTVLA PPEVGSWPKS SLFQWFNFKW VHDFTIQGTG 180 SVNGQGFYWW TPSNVYFIQK RFKHIPDMKP TALRFYASYN VTVRNIEIIN SPQCHLKFDN 240 SKGIKVNNIT ISSPENSPNT DGIHLQNTQD VEIQHSNIGT GDDCISIQTG CSNIHVHHIN 300 CGPGHGISLG GLGKDKSVAC VSNIVVEKIS LHNTLAGARI KTWQGGLGSV KNVSFSNIQV 360 SDVKYPIIID QFYCDKHICK NQTEAVAISG VKFDQIIGSY ITQPIHLACS KDVPCIDVDL 420 IDIQLKPSPG YRSFRQALCW NSYGKSQAPL VPSSIDYCLK RDSGWIKRVA RSHENLC 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 5.0e-66 | 78 | 446 | 376 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-68 | 115 | 425 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 4.0e-68 | 82 | 446 | 372 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-72 | 85 | 452 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-93 | 77 | 473 | 400 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 29 | 477 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 1 | 477 | 1 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 31 | 477 | 31 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 83 | 464 | 1 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 477 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-26 | 176 | 377 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 3e-19 | 84 | 460 | 22 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 4e-17 | 181 | 407 | 79 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-17 | 181 | 407 | 79 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-17 | 181 | 407 | 79 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |