CAZyme Information

Basic Information
SpeciesRicinus communis
Cazyme ID27724.m000018
FamilyGH13
Protein PropertiesLength: 538 Molecular Weight: 60258.7 Isoelectric Point: 5.3021
ChromosomeChromosome/Scaffold: 27724 Start: 388 End: 2004
Description
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH13263790
  GDLPGITAKLDYIASLGVDIVWLSPFFKSPMKDFGYDIADYCDVDPLFGTLADFDALVAKAHSLGLKIMIDQVMAHTAENHPWFVESRSSRDNPKADWYV
  WSDPLPDGNPPNNWLSVFGGSAWQWDSRRKQYYMHNFLVNQPQVNFHHPEVQQAHLDSLRFWLERGVDGVRMDACNFHFHDRTLQSNPPALVRDTSTVTD
  VNPYGMQAHIHDKTQPENIAFLQRLRKLLDEYGAVAIGEVGADDSLAVMADYTSGGDKLHMAYSFNLLTPQFSSRHIRRQVEEFNARVKDGWASWSVGNH
  DSIRVATRWSAGESTPAVRSSLSKLVLALQLSLKGTPCLYQGDELALPEADVPY
Full Sequence
Protein Sequence     Length: 538     Download
NPWWREAIIY QVYPRSYLDT NGDGVGDLPG ITAKLDYIAS LGVDIVWLSP FFKSPMKDFG    60
YDIADYCDVD PLFGTLADFD ALVAKAHSLG LKIMIDQVMA HTAENHPWFV ESRSSRDNPK    120
ADWYVWSDPL PDGNPPNNWL SVFGGSAWQW DSRRKQYYMH NFLVNQPQVN FHHPEVQQAH    180
LDSLRFWLER GVDGVRMDAC NFHFHDRTLQ SNPPALVRDT STVTDVNPYG MQAHIHDKTQ    240
PENIAFLQRL RKLLDEYGAV AIGEVGADDS LAVMADYTSG GDKLHMAYSF NLLTPQFSSR    300
HIRRQVEEFN ARVKDGWASW SVGNHDSIRV ATRWSAGEST PAVRSSLSKL VLALQLSLKG    360
TPCLYQGDEL ALPEADVPYE LLQDPYGITF WPEFKGRDGC RTPMPWTSET PNAGFTTGKP    420
WLPVPPEHVA LAESGQDKDP QSTLNFARNI IKWRRNLPQL TRGGIVFFDV PEQALALRRD    480
EEGLPSVLAV FNVTNAPLTF DWPEAAGAKK LDGHGLSGDV NGTTVTLPPY GGWFGTIA      540
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd11332AmyAc_OligoGlu_TS3.0e-1362465492+
cd11328AmyAc_maltase1.0e-1403464481+
cd11333AmyAc_SI_OligoGlu_DGase1.0e-1655456468+
cd11331AmyAc_OligoGlu_like1.0e-1792464465+
cd11330AmyAc_OligoGlu02475476+
Gene Ontology
GO TermDescription
GO:0003824catalytic activity
GO:0005975carbohydrate metabolic process
GO:0043169cation binding
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCBA32444.10153425564Probable alpha-glucosidase [Curvibacter putative symbiont of Hydra magnipapillata]
RefSeqXP_002535920.1015381538alpha-amylase, putative [Ricinus communis]
RefSeqYP_526077.1025385537alpha-glucosidase [Saccharophagus degradans 2-40]
RefSeqZP_01547210.10353723554alpha-glucosidase [Stappia aggregata IAM 12614]
RefSeqZP_03699984.1035387533alpha amylase catalytic region [Lutiella nitroferrum 2002]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB4h2c_A025055521A Chain A, Trehalulose Synthase Mutb R284c Mutant
PDB2pwh_B025054520A Chain A, Trehalulose Synthase Mutb R284c Mutant
PDB2pwh_A025054520A Chain A, Trehalulose Synthase Mutb R284c Mutant
PDB2pwg_B025054520A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 Complexed To The Inhibitor Castanospermine
PDB2pwg_A025054520A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 Complexed To The Inhibitor Castanospermine
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO85603726932650
EH76382721822140
EH75995320221980
EH762334250152590
FC90306820432010
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_014_00091.4Aquca_014_00091.1Aquca_014_00091.3Aquca_014_00091.2Aquca_014_00091.5
Aquca_014_00091.6Aquca_014_00091.7Aquca_018_00158.1Aquca_018_00158.2Aquca_014_00091.8
Aquca_026_00010.1
Arabidopsis lyrata911044483030470308
Arabidopsis thalianaAT4G09020.1AT2G39930.1AT1G03310.2AT1G03310.1
Brachypodium distachyonBradi4g32707.2Bradi4g32707.1Bradi3g40410.2Bradi3g40410.1Bradi2g26170.1
Brassica rapaBra000667Bra005001Bra030528Bra033388
Carica papayaevm.model.supercontig_36.185evm.model.supercontig_485.4evm.model.supercontig_115.45
Capsella rubellaCarubv10003443mCarubv10024947mCarubv10012076m
Chlamydomonas reinhardtiig4436.t1g3160.t1
Citrus clementinaCiclev10000452mCiclev10000347mCiclev10007489mCiclev10023436m
Citrus sinensisorange1.1g009902morange1.1g006791morange1.1g003977morange1.1g011993morange1.1g005976m
orange1.1g003653morange1.1g003901morange1.1g005552morange1.1g047308m
Cucumis sativusCucsa.311690.1Cucsa.281840.2Cucsa.281840.1Cucsa.084930.1
Eucalyptus grandisEucgr.B00043.1Eucgr.C02189.3Eucgr.C02189.2Eucgr.C02189.1Eucgr.K03392.1
Fragaria vescamrna11912.1-v1.0-hybridmrna12022.1-v1.0-hybridmrna27855.1-v1.0-hybrid
Glycine maxGlyma06g10540.2Glyma04g10693.3Glyma04g10693.2Glyma04g10693.1Glyma08g03210.2
Glyma08g03210.1Glyma03g30771.1Glyma19g33620.2
Gossypium raimondiiGorai.009G233800.1Gorai.009G233800.2Gorai.009G233800.3Gorai.012G008800.3Gorai.012G008800.2
Gorai.012G008800.1Gorai.007G134600.3Gorai.007G134600.2Gorai.007G134600.1
Linum usitatissimumLus10036474Lus10021586Lus10000661Lus10027999Lus10017150
Malus domesticaMDP0000119748MDP0000118987MDP0000313388MDP0000185233MDP0000647541
MDP0000258604MDP0000238431
Manihot esculentacassava4.1_001932mcassava4.1_001414m
Medicago truncatulaMedtr3g099500.1Medtr8g101490.1
Mimulus guttatusmgv1a002417mmgv1a001549mmgv1a001869m
Oryza sativaLOC_Os08g40930.1LOC_Os09g29404.3LOC_Os09g29404.1LOC_Os05g32710.1
Panicum virgatumPavirv00034683mPavirv00034682mPavirv00063957mPavirv00032505mPavirv00012813m
Physcomitrella patensPp1s25_63V6.1Pp1s36_254V6.2Pp1s36_254V6.1Pp1s62_201V6.2
Phaseolus vulgarisPhvul.009G033200.1Phvul.002G303600.1Phvul.001G148700.1Phvul.005G040300.1
Picea abiesMA_10431226g0020MA_159157g0180
Populus trichocarpaPotri.002G100900.2Potri.002G100900.4Potri.002G100900.3Potri.002G100900.1Potri.006G070800.3
Potri.006G070800.2Potri.006G070800.1Potri.018G132500.4Potri.018G132500.3Potri.018G132500.2
Potri.018G132500.1Potri.018G132500.5Potri.002G215400.1Potri.002G219900.1
Prunus persicappa001639mppa025097mppa001199m
Ricinus communis29908.m00608929776.m00048828153.m00028728323.m00004135877.m000015
29104.m000024
Setaria italicaSi029005mSi013277m
Selaginella moellendorffii10621875877414611
Sorghum bicolorSb02g027280.3Sb02g027280.2Sb02g027280.1Sb07g027200.1Sb09g019480.1
Thellungiella halophilaThhalv10028487mThhalv10028455mThhalv10028452mThhalv10016275mThhalv10006762m
Vitis viniferaGSVIVT01009087001GSVIVT01035168001GSVIVT01011096001
Volvox carteriVocar20007238mVocar20007651m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)