| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 27810.m000670 |
| Family | GH28 |
| Protein Properties | Length: 818 Molecular Weight: 91905 Isoelectric Point: 7.0598 |
| Chromosome | Chromosome/Scaffold: 27810 Start: 333245 End: 339837 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 75 | 335 | 0 |
| VKFPPGKYLTATIHLKSKVVLEIQKGATLLGGTRMEDYPKEFSRWYVVLAENASDVGITGGGAVDGQGSKFVKRFSEVKNVMVSWNQTGACLGDECRPRL VGFIGCTNVRVSNVSLTEPAYWCLHIVRCQNTSIHDVSIYGDFNTPNNDGVDIEDSNNTAITRCRIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIK FGSASWFDFKNLVFDNITIVDSHRGLGLQIRDGATSENGVFLSGSKNGLLSNLRFINVNLT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 818 Download |
| MTTLLIIHLI TVLIQISLIQ SHPDTSLLPS TIQLPRQTIT LSVTDFGATG NGHDYDTVPI 60 QSTIDACPPT TTCHVKFPPG KYLTATIHLK SKVVLEIQKG ATLLGGTRME DYPKEFSRWY 120 VVLAENASDV GITGGGAVDG QGSKFVKRFS EVKNVMVSWN QTGACLGDEC RPRLVGFIGC 180 TNVRVSNVSL TEPAYWCLHI VRCQNTSIHD VSIYGDFNTP NNDGVDIEDS NNTAITRCRI 240 DTGDDAICPK TYTGPLYNLT ATDSWIRTKS SAIKFGSASW FDFKNLVFDN ITIVDSHRGL 300 GLQIRDGATS ENGVFLSGSK NGLLSNLRFI NVNLTYRRWT NYEGGLIDYR PGCQGLVNHS 360 AAGIIMEHIE GFEIENVNMR WSDTENQKEQ WDNPLDFRPW TVKTFRKQDM KLLCKVNFFA 420 HLFKRACDPT LNPYTRQFYL SSVPPNQRTL NSLCSQGRLQ EALFEMACQG LEMKFDGYNT 480 LLNECVNNKA IREGQRVHAH IIKTYYLPSV YLRTRLIVFY TKCDLLMDAR HVFDEMSERN 540 VVSWTAMISG YSRRGFAFET LHLFVRMLRS DIEPNEFTLA TVLTSCTDAS GSELGRQIHS 600 LIIKCNYDSH IFVGSSLLDM YAKAGRILEA RMVFESLPER DVVSCTAIIS GYAQLGLDEE 660 ALELFRRLER EGLSSNCVTY ASVLTSLSGL AALDHGKQVH SHVLRRELPF YVVLQNSMID 720 MYSKCGSLNY ARRIFDSMPE RTVISWNAML VGYGKHGMGR EVVELFKLMR TENKVKPDSV 780 TILAVLSGCS HGGFEDKGLE IFDEMLKGQT KFAYSSRE |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03077 | PLN03077 | 1.0e-24 | 480 | 739 | 264 | + Protein ECB2; Provisional | ||
| PLN03077 | PLN03077 | 5.0e-62 | 491 | 805 | 315 | + Protein ECB2; Provisional | ||
| PLN03077 | PLN03077 | 2.0e-62 | 441 | 801 | 364 | + Protein ECB2; Provisional | ||
| PLN03077 | PLN03077 | 7.0e-63 | 456 | 807 | 355 | + Protein ECB2; Provisional | ||
| PLN03081 | PLN03081 | 8.0e-78 | 448 | 805 | 369 | + pentatricopeptide (PPR) repeat-containing protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002277308.1 | 0 | 421 | 812 | 11 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277308.1 | 9e-18 | 469 | 744 | 262 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 32 | 425 | 3 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322694.1 | 0 | 466 | 808 | 1 | 343 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526753.1 | 0 | 1 | 818 | 1 | 818 | pentatricopeptide repeat-containing protein, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-19 | 33 | 336 | 22 | 369 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-19 | 33 | 336 | 22 | 369 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-19 | 33 | 336 | 22 | 369 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-19 | 33 | 336 | 22 | 369 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 2e-16 | 15 | 282 | 127 | 449 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
