| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 28333.m000572 |
| Family | PL4 |
| Protein Properties | Length: 676 Molecular Weight: 77777.8 Isoelectric Point: 6.2519 |
| Chromosome | Chromosome/Scaffold: 28333 Start: 159534 End: 165790 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 48 | 652 | 0 |
| RHNQRRMVIDNGILQITLLNPTGDVIGIKYNGIDNVLGTQNGEGNRGYWDVVWNIPGTHVSYDRLKGTNFSVVMEDENQVEVSFTRTWNASVGNWTAPLN VDKRYIVRRGSSRIYMYTILERLEGWPDIDMDQIRIVFKLQNDKFHWMVVSDDRHRIMPTPKDCHNGQRLAYKEAVLLTNPANPKLRGEVEDKYQYSSEN REDRVHGWISEDPPVGFWMITPSDEFRAGGPLKQDLTAHVGPTVLNMFTSTHYTGKDLNTKYRDGKPWKKVFGPVCVYLNSILDDEDPLLLWEDAKEQML IEFESWPYNFPESEDLPTSDERGTVSGQLLVSDRYINQRLMWAASAYVGLAPPGEVGSWQRETQGYQFWTKANREGFFFIENVRAGNYNLYAWVPGIIGD WKYDVDVLVKPGSEIELGVLVYKPPRNGPTLWEIGIPDRTAAEFFVPDTCPTLENKLYSNHPDKFRQYGLWDRYTDLYPEHDLIYTVGISNYSQDWFFAH FSRKTENNTYEATTWQIKFALENVKRDGTYTLQMALASATASELQVRFNDPSKKRPHFTTKLIGRDNAIARHGIHGLYWLYSINVPGSLLRQNNTIYLTQ SRGSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 676 Download |
| MGKVGILAGC LQAMVAWLMF CLFTATSGEI SPIDYCSSPG VKLYWKNRHN QRRMVIDNGI 60 LQITLLNPTG DVIGIKYNGI DNVLGTQNGE GNRGYWDVVW NIPGTHVSYD RLKGTNFSVV 120 MEDENQVEVS FTRTWNASVG NWTAPLNVDK RYIVRRGSSR IYMYTILERL EGWPDIDMDQ 180 IRIVFKLQND KFHWMVVSDD RHRIMPTPKD CHNGQRLAYK EAVLLTNPAN PKLRGEVEDK 240 YQYSSENRED RVHGWISEDP PVGFWMITPS DEFRAGGPLK QDLTAHVGPT VLNMFTSTHY 300 TGKDLNTKYR DGKPWKKVFG PVCVYLNSIL DDEDPLLLWE DAKEQMLIEF ESWPYNFPES 360 EDLPTSDERG TVSGQLLVSD RYINQRLMWA ASAYVGLAPP GEVGSWQRET QGYQFWTKAN 420 REGFFFIENV RAGNYNLYAW VPGIIGDWKY DVDVLVKPGS EIELGVLVYK PPRNGPTLWE 480 IGIPDRTAAE FFVPDTCPTL ENKLYSNHPD KFRQYGLWDR YTDLYPEHDL IYTVGISNYS 540 QDWFFAHFSR KTENNTYEAT TWQIKFALEN VKRDGTYTLQ MALASATASE LQVRFNDPSK 600 KRPHFTTKLI GRDNAIARHG IHGLYWLYSI NVPGSLLRQN NTIYLTQSRG SGPFRGVMYD 660 YIRLEAPSEH TWLASY 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam09284 | RhgB_N | 0.001 | 152 | 286 | 136 | + Rhamnogalacturonase B, N-terminal. Members of this family are found in prokaryotic Rhamnogalacturonase B, and adopt a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding. | ||
| cd10316 | RGL4_M | 1.0e-31 | 368 | 467 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-49 | 479 | 665 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 6.0e-73 | 45 | 328 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 6.0e-80 | 47 | 237 | 193 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002285626.1 | 0 | 56 | 667 | 1 | 615 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002308510.1 | 0 | 1 | 667 | 1 | 671 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002319997.1 | 0 | 54 | 669 | 1 | 619 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527229.1 | 0 | 1 | 676 | 1 | 676 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527245.1 | 0 | 54 | 669 | 2 | 620 | lyase, putative [Ricinus communis] |
