| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 28333.m000588 |
| Family | PL4 |
| Protein Properties | Length: 621 Molecular Weight: 70950.7 Isoelectric Point: 4.9315 |
| Chromosome | Chromosome/Scaffold: 28333 Start: 317395 End: 320921 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 2 | 602 | 0 |
| VVIDNGIIEVTLSSPDGNVIGIKYRGIDNVLESLNEDDNRGYWDVVWNKPDESDIFDKIQATDFSIIMADEDQVEVSFSKKWDSSRDKSMVPLNIDKRYI VRRGCSGLYVYAILERLEGWPDVDMDQIRVVFKLRQEKFHFMAVSDDRQRIMPMPEDRATGQPLAYPEAVLLTRPTNPELRGEVDDKYQYSCEDEDNKVH GWTSDDPPVGFWMITPSNEFRVGGPMKQDLTSHVGPTVLNMFTSNHYAGKDLNTEYRNGEPWKKVLGPVFVYLNSMSPTDHNSSALWEDAKAQMSVEVGS WPYDFVQSEEFPSSDQRGTVSGQLLVRDRYINERLLYARSAYVGLAPPGYAGSWQRDSKGYQFWTRASRKGIFSIKNVRPGNYSLYAWVPGVIGDYKYNV DITILPGSKIQLRVLIYDPPRNGPTLWEIGIPDRSASEFYVPDTYPTLMNKLYTDHPTEKFRQYGLWARYADLYPNNDLVYTVGVSNYVQDWFFAHVNRE IGNKTYGATTWQIIFQLDSVKQGGNYTLQLALASATVSEILVRFNDPSSNRPLFTTGLIGTDNAIARHGIHGLYWLFTINVPSDQLRDGKNIIYLTQARN D | |||
| Full Sequence |
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| Protein Sequence Length: 621 Download |
| MVVIDNGIIE VTLSSPDGNV IGIKYRGIDN VLESLNEDDN RGYWDVVWNK PDESDIFDKI 60 QATDFSIIMA DEDQVEVSFS KKWDSSRDKS MVPLNIDKRY IVRRGCSGLY VYAILERLEG 120 WPDVDMDQIR VVFKLRQEKF HFMAVSDDRQ RIMPMPEDRA TGQPLAYPEA VLLTRPTNPE 180 LRGEVDDKYQ YSCEDEDNKV HGWTSDDPPV GFWMITPSNE FRVGGPMKQD LTSHVGPTVL 240 NMFTSNHYAG KDLNTEYRNG EPWKKVLGPV FVYLNSMSPT DHNSSALWED AKAQMSVEVG 300 SWPYDFVQSE EFPSSDQRGT VSGQLLVRDR YINERLLYAR SAYVGLAPPG YAGSWQRDSK 360 GYQFWTRASR KGIFSIKNVR PGNYSLYAWV PGVIGDYKYN VDITILPGSK IQLRVLIYDP 420 PRNGPTLWEI GIPDRSASEF YVPDTYPTLM NKLYTDHPTE KFRQYGLWAR YADLYPNNDL 480 VYTVGVSNYV QDWFFAHVNR EIGNKTYGAT TWQIIFQLDS VKQGGNYTLQ LALASATVSE 540 ILVRFNDPSS NRPLFTTGLI GTDNAIARHG IHGLYWLFTI NVPSDQLRDG KNIIYLTQAR 600 NDGPFRGVMY DYIRLEGPAE T 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 2.0e-32 | 317 | 416 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 3.0e-49 | 428 | 616 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-72 | 2 | 276 | 281 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-88 | 2 | 185 | 186 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_179847.1 | 0 | 2 | 621 | 62 | 677 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 2 | 621 | 57 | 674 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002319997.1 | 0 | 2 | 621 | 1 | 620 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527229.1 | 0 | 2 | 620 | 54 | 669 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527245.1 | 0 | 1 | 621 | 1 | 621 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EE260349 | 252 | 370 | 621 | 0 |
| EH792178 | 287 | 291 | 575 | 0 |
| DY969340 | 324 | 213 | 536 | 0 |
| GO374104 | 366 | 260 | 620 | 0 |
| EE260349 | 24 | 360 | 383 | 0.27 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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