Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 28401.m000073 |
Family | CBM43 |
Protein Properties | Length: 388 Molecular Weight: 43430.6 Isoelectric Point: 8.8435 |
Chromosome | Chromosome/Scaffold: 28401 Start: 3350 End: 4662 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 298 | 381 | 5.6e-28 |
WCVVAKGANKTAVAGALTYACSQGNKTCDPIQPGKQCFKPESLYWHASYAFSSYWAQFKKIGGTCQFNGLATQTVMDPSFGHCK | |||
GH17 | 2 | 270 | 0 |
VPNELIANISKSQSLSDQWVNSNVVPFYPDVKIRYLLIGNEILTNPDTGTWFNLVPAMRRIKSSLRTHKIHKIKVSTPHAMNVLESSFPPSNGTFRSDIS GPIIKPMLQFLNRTKSFFFLDVYPYFAWADNWQNINLDYALLESKNVTYTDPVTNLIYTNLLDQMLDATIFAMKRLGYPDIRIFIAETGWPSNGDFDQIG ANIYNAATYNRNVVKRLTTKPAIGTPARPGSGLPTFIFALYNENQKPGPGTERHFGLLYPNGSNIYEID |
Full Sequence |
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Protein Sequence Length: 388 Download |
MVPNELIANI SKSQSLSDQW VNSNVVPFYP DVKIRYLLIG NEILTNPDTG TWFNLVPAMR 60 RIKSSLRTHK IHKIKVSTPH AMNVLESSFP PSNGTFRSDI SGPIIKPMLQ FLNRTKSFFF 120 LDVYPYFAWA DNWQNINLDY ALLESKNVTY TDPVTNLIYT NLLDQMLDAT IFAMKRLGYP 180 DIRIFIAETG WPSNGDFDQI GANIYNAATY NRNVVKRLTT KPAIGTPARP GSGLPTFIFA 240 LYNENQKPGP GTERHFGLLY PNGSNIYEID LSGETLDSEY KEPLPVPTNN EPYKGKIWCV 300 VAKGANKTAV AGALTYACSQ GNKTCDPIQP GKQCFKPESL YWHASYAFSS YWAQFKKIGG 360 TCQFNGLATQ TVMDPSFGHC KLPSVTLV |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0007 | 184 | 262 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-16 | 298 | 369 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-31 | 298 | 381 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-90 | 2 | 270 | 270 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89481.1 | 0 | 1 | 387 | 92 | 478 | beta-1,3-glucanase [Salix gilgiana] |
EMBL | CBI39470.1 | 0 | 1 | 387 | 81 | 467 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002303070.1 | 0 | 1 | 387 | 75 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334812.1 | 0 | 1 | 387 | 79 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534357.1 | 0 | 1 | 388 | 1 | 388 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 2 | 271 | 54 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 2 | 271 | 54 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 2 | 271 | 54 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 7.00649e-45 | 5 | 272 | 50 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 7.00649e-45 | 5 | 272 | 50 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX291357 | 356 | 24 | 378 | 0 |
EX279500 | 314 | 24 | 337 | 0 |
DT572251 | 303 | 33 | 335 | 0 |
EX279500 | 18 | 342 | 359 | 0.009 |
EX279500 | 14 | 328 | 341 | 0.009 |
Sequence Alignments (This image is cropped. Click for full image.) |
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