| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29333.m001099 |
| Family | AA7 |
| Protein Properties | Length: 555 Molecular Weight: 60841.1 Isoelectric Point: 6.7102 |
| Chromosome | Chromosome/Scaffold: 29333 Start: 454898 End: 465343 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| AA7 | 133 | 327 | 5.6e-27 |
| VPDVVVFPRSEEDVSNIVKCCDKYKVPIVPYGGATSIEGHTLSPHGGVCIDMSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATI GGMCATRCSGSLAVRYGTMRDNVISLKVILANGDVVKTASRARKSAAGYDLTRLVIGSEGTLGIITEITLRLQKIPQHSVVAMCNFPTIKDAADV | |||
| Full Sequence |
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| Protein Sequence Length: 555 Download |
| MAFASWLSRL RSASKTSYGN VASAYFHNIR PQSTTTAKTP FLLLPFTVAA TVSAGSLAFY 60 FQPQLSLCDA SNLDSRIGGK NSTDFVVKGT HKKVPQQLID ELKAICRDDM TLDYDERYFH 120 GKPQNSFHKA VNVPDVVVFP RSEEDVSNIV KCCDKYKVPI VPYGGATSIE GHTLSPHGGV 180 CIDMSLMKSV KALHIEDMDV VVEPGIGWME LNEYLEPYGL FFPLDPGPGA TIGGMCATRC 240 SGSLAVRYGT MRDNVISLKV ILANGDVVKT ASRARKSAAG YDLTRLVIGS EGTLGIITEI 300 TLRLQKIPQH SVVAMCNFPT IKDAADVAIA TMLSGIQVSR VELLDEVQVR AINIANGKNL 360 PEVPTLMFEF VGTEAYAREQ TLIVQKIASE HNGSDFIFAE QPEAKKELWK IRKEALWACF 420 AMEPKYEAMI SDVCVPLSRL AELISRSKQE LDASPLVCTV IAHAGDGNFH TVILFDPNQE 480 AHQQEAERLN HFMVHTALSM EGTCTGEHGV GTGKMKYLEK ELGVEALKTM KRIKAALDPN 540 NIMNPGKLIP PHVCF |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 9.0e-52 | 133 | 554 | 430 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 1.0e-68 | 307 | 548 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 1.0e-93 | 137 | 547 | 420 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 5.0e-122 | 101 | 551 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 9 | 555 | 555 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001142976.1 | 0 | 68 | 555 | 69 | 555 | hypothetical protein LOC100275430 [Zea mays] |
| RefSeq | NP_568170.1 | 0 | 43 | 555 | 53 | 567 | FAD linked oxidase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267321.1 | 0 | 1 | 555 | 1 | 566 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322755.1 | 0 | 77 | 555 | 1 | 480 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524111.1 | 0 | 1 | 555 | 1 | 555 | d-lactate dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 9.99995e-41 | 136 | 549 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 9.99995e-41 | 136 | 549 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 9.99995e-41 | 136 | 549 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 9.99995e-41 | 136 | 549 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 9.99995e-41 | 136 | 549 | 54 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EX265038 | 322 | 149 | 469 | 0 |
| DY305587 | 368 | 188 | 555 | 0 |
| EX261606 | 322 | 205 | 522 | 0 |
| DT747637 | 285 | 177 | 461 | 0 |
| EX261606 | 50 | 503 | 552 | 0.13 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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