| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29469.m000051 |
| Family | PL1 |
| Protein Properties | Length: 389 Molecular Weight: 43676.6 Isoelectric Point: 8.0023 |
| Chromosome | Chromosome/Scaffold: 29469 Start: 23707 End: 27558 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 115 | 299 | 0 |
| IVFEVSGTIHLHSYLSVSSYKTIDGRGQQIKLTGKGLRLKECEHVIVCNLEFEGGRGXXRGHDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDI TISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTHQRHPRVRFGKVHLYNNYTRNWGIYAVCASVEAQIYSQYNIYEAA | |||
| Full Sequence |
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| Protein Sequence Length: 389 Download |
| MGNSHGHGHH HRKNPIHNGA NPKTEAAPPP PAVNKHGLQP LNQNQNQDLK QNTMVTSLPY 60 AHVDSSLRAL AGQAEGFGRF AIGGFHGQLY HVTTLSDDGP GSLRDGCRKK EPLWIVFEVS 120 GTIHLHSYLS VSSYKTIDGR GQQIKLTGKG LRLKECEHVI VCNLEFEGGR GXXRGHDVDA 180 IQIKPKSKHI WIDRCSLRDY DDGLIDITRE STDITISRCH FSQHDKTMLI GADPSHIGDR 240 CIRVTIHHCF FDGTHQRHPR VRFGKVHLYN NYTRNWGIYA VCASVEAQIY SQYNIYEAAQ 300 KKVAFKYLTE KAADKEEAVS GFIRSEGDFF VSGTQAGLMS ETVEHCTFNP REYYPTWTVE 360 APTDALKNVL QHYTGWQCVP RPTDQISTA |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 4.0e-38 | 110 | 294 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 3.0e-49 | 83 | 369 | 304 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 6.0e-63 | 129 | 299 | 180 | + Amb_all domain. | ||
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 3.99931e-42 | 64 | 369 | 15 | 342 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 3.99931e-42 | 64 | 369 | 15 | 342 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 2e-25 | 131 | 296 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 1e-24 | 82 | 370 | 22 | 323 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 6e-20 | 136 | 372 | 82 | 319 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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