| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29596.m000703 |
| Family | PL1 |
| Protein Properties | Length: 313 Molecular Weight: 34852.1 Isoelectric Point: 9.8349 |
| Chromosome | Chromosome/Scaffold: 29596 Start: 128155 End: 130097 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 101 | 299 | 0 |
| ITFKRNMNINLRKPLLISSFTTLDGRGVDVHISGNACLLVYKATDVIIHGLRIHHCKAVGPSSVRGPNGQIVPLGQMDGDAIRLVSASKVWIDHNTLYAC QDGLLDVTRGSTDVTISNNWFKDQDKVMLLGHDDGYIRDKNMKVTVVFNHFGPNCNQRMPRVRHGYAHVTNNLYQGWQQYAIGGSMNPSIKSEANYFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 313 Download |
| MVVGYFALAL CTVIFFLLFT PNVCFAQKMN VIDNCWRQNP NWRRSRQQLA TCSVGFAGKM 60 TNNIGKSVTP YKVTDPSDDP LNPKPGTLRY GATMIDGKVW ITFKRNMNIN LRKPLLISSF 120 TTLDGRGVDV HISGNACLLV YKATDVIIHG LRIHHCKAVG PSSVRGPNGQ IVPLGQMDGD 180 AIRLVSASKV WIDHNTLYAC QDGLLDVTRG STDVTISNNW FKDQDKVMLL GHDDGYIRDK 240 NMKVTVVFNH FGPNCNQRMP RVRHGYAHVT NNLYQGWQQY AIGGSMNPSI KSEANYFIAP 300 KGGKKEMPGL SNQ |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-26 | 117 | 297 | 193 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-57 | 106 | 297 | 200 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-69 | 106 | 301 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_196490.1 | 0 | 60 | 307 | 1 | 248 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267384.1 | 0 | 29 | 307 | 19 | 297 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 29 | 307 | 1 | 280 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 29 | 307 | 1 | 279 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 313 | 1 | 313 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 30 | 307 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 30 | 307 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 4e-16 | 112 | 297 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.000000000000001 | 93 | 299 | 42 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.000000000000003 | 112 | 297 | 80 | 287 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
