| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29596.m000705 |
| Family | PL4 |
| Protein Properties | Length: 755 Molecular Weight: 86022.9 Isoelectric Point: 4.842 |
| Chromosome | Chromosome/Scaffold: 29596 Start: 133198 End: 139375 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 125 | 728 | 0 |
| KGEVVLDNGFLQITISVPEGLVTGVQYNGMANLLEVLNHETDRGYWDLVWSDEETIRKKGNFDRMEGTNFTVVVQNEEQIEVSFSRHWDSSLKGKLVPMN IDKRFVMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKLRKDKFNYMAIADNRRRYMPLPDDRLKDRGLPLAYPEAVLLVNPIEPEFKGEVDDKYEYSC ENRESGVHGWISTGSAVGFWLITPSAEFKSGGPLKQFLTSHVGPTILSVFHSTHYAGADMIINFGPNEPWKKVYGPVFVYLNSLSTEGDPLSLWEDAKKQ MMKEVESWPYDFPASEDFPPSDQRGNVCGKLLVMDRCVSDENIPADGAYVGLAPVGDVGSWQIESKGYQFWTEADEDGSFTISNVRPGDYNIYAWVPGFI GDYKNDTVINISNGSSIAVGDLVYEPPRNGSTLWEIGIPDRSAAEFYVPDPNPNYVNMLYLNHTDRFRQYGLWERYSELYPDEDLVFTIGTSDYSKDWFF AQVTSSSNNTYQGTTWQIQFELEEVDQSATYKLRLALATANVAELQVRVNDRNADSSLFSTGKFGKDNTIARHGIHGLYRLFNVDVPGTQLLEGNNTIFL TQAN | |||
| Full Sequence |
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| Protein Sequence Length: 755 Download |
| MEGTKVTVAV ENDEQIEVSL SRTWKSSLKG KLVPMNIGKR FVMLRGSTGF YTYAIYEHLK 60 EWPAFDLDNT RIAFKLRKDK FDYMAIADNR RRYMPLPDDR LKDRGKPLAY PEAVLLVNPI 120 KSELKGEVVL DNGFLQITIS VPEGLVTGVQ YNGMANLLEV LNHETDRGYW DLVWSDEETI 180 RKKGNFDRME GTNFTVVVQN EEQIEVSFSR HWDSSLKGKL VPMNIDKRFV MLRGSSGFYT 240 YAIYEHLKEW PAFDLDNTRI AFKLRKDKFN YMAIADNRRR YMPLPDDRLK DRGLPLAYPE 300 AVLLVNPIEP EFKGEVDDKY EYSCENRESG VHGWISTGSA VGFWLITPSA EFKSGGPLKQ 360 FLTSHVGPTI LSVFHSTHYA GADMIINFGP NEPWKKVYGP VFVYLNSLST EGDPLSLWED 420 AKKQMMKEVE SWPYDFPASE DFPPSDQRGN VCGKLLVMDR CVSDENIPAD GAYVGLAPVG 480 DVGSWQIESK GYQFWTEADE DGSFTISNVR PGDYNIYAWV PGFIGDYKND TVINISNGSS 540 IAVGDLVYEP PRNGSTLWEI GIPDRSAAEF YVPDPNPNYV NMLYLNHTDR FRQYGLWERY 600 SELYPDEDLV FTIGTSDYSK DWFFAQVTSS SNNTYQGTTW QIQFELEEVD QSATYKLRLA 660 LATANVAELQ VRVNDRNADS SLFSTGKFGK DNTIARHGIH GLYRLFNVDV PGTQLLEGNN 720 TIFLTQANHV SPFQGIMYDY IRLEGPPFSN TIKKM 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10320 | RGL4_N | 4.0e-14 | 3 | 120 | 118 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 6.0e-57 | 558 | 744 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-58 | 2 | 128 | 127 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| cd10320 | RGL4_N | 3.0e-73 | 127 | 413 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 1.0e-91 | 127 | 316 | 190 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002301113.1 | 8.40779e-45 | 1 | 128 | 120 | 247 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301113.1 | 0 | 125 | 747 | 56 | 677 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527356.1 | 0 | 1 | 755 | 1 | 755 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 1 | 128 | 76 | 203 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 127 | 751 | 14 | 639 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GE636266 | 255 | 419 | 669 | 0 |
| EG691325 | 220 | 268 | 487 | 0 |
| DT552229 | 293 | 130 | 421 | 0 |
| DT552229 | 128 | 1 | 128 | 0 |
| EG691325 | 49 | 80 | 128 | 3e-18 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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