| Basic Information | |
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| Species | Ricinus communis |
| Cazyme ID | 29596.m000706 |
| Family | PL4 |
| Protein Properties | Length: 639 Molecular Weight: 72410.9 Isoelectric Point: 4.4596 |
| Chromosome | Chromosome/Scaffold: 29596 Start: 140213 End: 144879 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 6 | 616 | 0 |
| VHLHIEDHHVVLDNGILQVTLSNPGGIVTGVRYNNVDNLLEVLDDEVNRGYWDLVWSAAGSTGTTGTFDVFEGTSFRVIVENEDQVEISFTRTWDPSLEG KLVSLNLDKRFIMLRNSSGFYSYAVFEHLGEWPPFNLPQTRIVFQLRKDKFHYMAIADNRQRFMPLPDDRLPERGQPLDFPEAVLLVDPVEPEFKGEVDD KYEYSLENKDLKVHGWICFDPPIGFWQINPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLNPGEPWKKVFGPVFMYVNSVEDKDDALSLW NDAQEQMLKEVQSWPYSFPASEDFPHSDQRGTISGTLQIRDRYVSNECIPANGAYVGLAPPGDVGSWQTECKGYQFWTNADADGYFSISSVRSGEYNLYA WVPGFIGDYRNDCVIKITAGCDINVGDLLYEPPRDGPTLWEIGIPDRTAGEFYIPDPNPKYINKLYINHPDRFRQYGLWERYADLYPNEDLVYTVGVSDY KKDWFFAQVNRKKDDGIYQGTTWQIKFELDSLDQSGTYKLRLALATANVAELQVRINDGKADSPQFTTGEIGHDNTIARHGIHGLYRLYSVDVPGTQLVE GENSIFLTQTI | |||
| Full Sequence |
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| Protein Sequence Length: 639 Download |
| MSTPGVHLHI EDHHVVLDNG ILQVTLSNPG GIVTGVRYNN VDNLLEVLDD EVNRGYWDLV 60 WSAAGSTGTT GTFDVFEGTS FRVIVENEDQ VEISFTRTWD PSLEGKLVSL NLDKRFIMLR 120 NSSGFYSYAV FEHLGEWPPF NLPQTRIVFQ LRKDKFHYMA IADNRQRFMP LPDDRLPERG 180 QPLDFPEAVL LVDPVEPEFK GEVDDKYEYS LENKDLKVHG WICFDPPIGF WQINPSSEFR 240 SGGPLKQNLT SHVGPYTLAM FLSAHYSGED LVLKLNPGEP WKKVFGPVFM YVNSVEDKDD 300 ALSLWNDAQE QMLKEVQSWP YSFPASEDFP HSDQRGTISG TLQIRDRYVS NECIPANGAY 360 VGLAPPGDVG SWQTECKGYQ FWTNADADGY FSISSVRSGE YNLYAWVPGF IGDYRNDCVI 420 KITAGCDINV GDLLYEPPRD GPTLWEIGIP DRTAGEFYIP DPNPKYINKL YINHPDRFRQ 480 YGLWERYADL YPNEDLVYTV GVSDYKKDWF FAQVNRKKDD GIYQGTTWQI KFELDSLDQS 540 GTYKLRLALA TANVAELQVR INDGKADSPQ FTTGEIGHDN TIARHGIHGL YRLYSVDVPG 600 TQLVEGENSI FLTQTISTGP VQGIMYDYIR LEGPPASDS 660 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 2.0e-33 | 334 | 433 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 6.0e-54 | 445 | 632 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-70 | 14 | 301 | 291 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 1.0e-99 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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