| Basic Information | |
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| Species | Ricinus communis |
| Cazyme ID | 29596.m000707 |
| Family | PL4 |
| Protein Properties | Length: 646 Molecular Weight: 74049.6 Isoelectric Point: 4.7884 |
| Chromosome | Chromosome/Scaffold: 29596 Start: 151919 End: 156267 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 22 | 626 | 0 |
| MQKCKQVVMDNDILQVTLSKPEGIVTGIRFNGISNVLEVRNDESNRRYWDLVWSKEGSPGTTGISYVIKGTDFRVIVENEEQVEISFTRMWDPSLEGKLA PLNIDKRFIMLRNSSGFYSYAIYEHLKEWPAFNLPQTRIVFKLRKDKFHYMAVADNRQRYMPLPEDRLPPRGKPLAYPEAVLLVNPVEPEFKGEVDDKYQ YSCENRNLQVHGWICFEPRVGFWQTVSSGPVDHSNRTLPLMSVLPILPAHYSGEDMVLKLKSGEPRKKVFGPVFIYLNTLLDANDPLLLWEDAKLQMLIE VQSWPYSFPASEDFPSSDQRGSASGRLLVRDRYVSDYDMPANGACVGLAPSGDVGSWQLENKVKCYQFWRKADEDGYFFINDIRTGDYNLYAWVPGFIGD YRYDTVVTITEGCYIDLGDVVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVDHPDRFRQYGLWERYTDLYPDGDLFYTVETGDFSKDWFFTH VPRKTDDGNYQGTTWQIKFRLDTANRNGTYTLQLALATANDVELLVRINDPGTNPPLFTTGLIGHDNTIARHGIHGLYRLYSIQVPGAELVEGDNTIFLQ IIATS | |||
| Full Sequence |
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| Protein Sequence Length: 646 Download |
| MDCSSFSESS GKNDMLITET VMQKCKQVVM DNDILQVTLS KPEGIVTGIR FNGISNVLEV 60 RNDESNRRYW DLVWSKEGSP GTTGISYVIK GTDFRVIVEN EEQVEISFTR MWDPSLEGKL 120 APLNIDKRFI MLRNSSGFYS YAIYEHLKEW PAFNLPQTRI VFKLRKDKFH YMAVADNRQR 180 YMPLPEDRLP PRGKPLAYPE AVLLVNPVEP EFKGEVDDKY QYSCENRNLQ VHGWICFEPR 240 VGFWQTVSSG PVDHSNRTLP LMSVLPILPA HYSGEDMVLK LKSGEPRKKV FGPVFIYLNT 300 LLDANDPLLL WEDAKLQMLI EVQSWPYSFP ASEDFPSSDQ RGSASGRLLV RDRYVSDYDM 360 PANGACVGLA PSGDVGSWQL ENKVKCYQFW RKADEDGYFF INDIRTGDYN LYAWVPGFIG 420 DYRYDTVVTI TEGCYIDLGD VVYEPPRNGP TLWEIGIPDR SAAEFYVPDP DPKYINKLYV 480 DHPDRFRQYG LWERYTDLYP DGDLFYTVET GDFSKDWFFT HVPRKTDDGN YQGTTWQIKF 540 RLDTANRNGT YTLQLALATA NDVELLVRIN DPGTNPPLFT TGLIGHDNTI ARHGIHGLYR 600 LYSIQVPGAE LVEGDNTIFL QIIATSPLQG VMYDYIRLER PSSFNS 660 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 9.0e-26 | 340 | 440 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-46 | 453 | 639 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 5.0e-52 | 27 | 300 | 289 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-99 | 27 | 216 | 190 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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