Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29617.m000139 |
Family | GH28 |
Protein Properties | Length: 216 Molecular Weight: 23312.9 Isoelectric Point: 5.183 |
Chromosome | Chromosome/Scaffold: 29617 Start: 119363 End: 121107 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 194 | 0 |
IAPEESPNTDGIDISASSHINIRNSLISTGDDCIAINGFTSNINISGVLCGPGHGISVGSLGKNGAYETVEDIHVENCTFNGTQNGVRIKTWPGGSGYAR RISFEQINLIASQNPIIIDQNYWDHFQYGRESSDVHISDVTYREIRGTSADLRAISLNCGKSTGCSNIVMDNIDIIPSTPGMQLYAFCNNAYG |
Full Sequence |
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Protein Sequence Length: 216 Download |
MIAPEESPNT DGIDISASSH INIRNSLIST GDDCIAINGF TSNINISGVL CGPGHGISVG 60 SLGKNGAYET VEDIHVENCT FNGTQNGVRI KTWPGGSGYA RRISFEQINL IASQNPIIID 120 QNYWDHFQYG RESSDVHISD VTYREIRGTS ADLRAISLNC GKSTGCSNIV MDNIDIIPST 180 PGMQLYAFCN NAYGSSTSAS PNVPCLSKRF DSLFHR |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-52 | 3 | 192 | 193 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 1.0e-58 | 3 | 213 | 217 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 7.0e-61 | 3 | 192 | 190 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-62 | 1 | 207 | 208 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 2.0e-66 | 1 | 197 | 198 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-18 | 9 | 176 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-18 | 9 | 176 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-18 | 9 | 176 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-18 | 9 | 176 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-18 | 9 | 176 | 152 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Sequence Alignments (This image is cropped. Click for full image.) |
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