Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29631.m001014 |
Family | GH28 |
Protein Properties | Length: 519 Molecular Weight: 56453.1 Isoelectric Point: 8.1184 |
Chromosome | Chromosome/Scaffold: 29631 Start: 128032 End: 132121 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 128 | 476 | 0 |
AAACKVEASTMLVPAEYIFLVGPVSFSGPYCQANIVFQLNGKIIAPTNSYVWAKGLLWWIEFTKLKGITIQGTGTIDGSGSVWWEDYPLDDPEDDETKLI IPLNNTVQQHPPMPVRSELGKKMPSIKPTALRFYGSFNATVTGITIQNSPQCHLKFDNCIGVVIHDITISSPGDSPNTDGIHLQNSKDVLIHSSNLACGD DCVSIQTGCTNVYIHNVNCGPGHGISIGSLGRDNTKACVSNITVRDVVMHNTMTGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKNQ TTAVSLSGINYEKIRGTYTVKPVHFACSDALPCIDVSLTTIELKPVQAQ |
Full Sequence |
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Protein Sequence Length: 519 Download |
MTGVSLRSLT FMFFIAFLVW SSSFETCIAR RGRHWRHGRG TSASLYNKRK GKSHGSSSNH 60 HQHNKGSKPK PPSHKAPLLP PAPTPPKDDA PPSSSSPIKG SATFNVLNFG AKGDGKTDDT 120 KAFQAAWAAA CKVEASTMLV PAEYIFLVGP VSFSGPYCQA NIVFQLNGKI IAPTNSYVWA 180 KGLLWWIEFT KLKGITIQGT GTIDGSGSVW WEDYPLDDPE DDETKLIIPL NNTVQQHPPM 240 PVRSELGKKM PSIKPTALRF YGSFNATVTG ITIQNSPQCH LKFDNCIGVV IHDITISSPG 300 DSPNTDGIHL QNSKDVLIHS SNLACGDDCV SIQTGCTNVY IHNVNCGPGH GISIGSLGRD 360 NTKACVSNIT VRDVVMHNTM TGVRIKTWQG GSGSVQGVLF SNIQVSEVQL PIVIDQFYCD 420 KSTCKNQTTA VSLSGINYEK IRGTYTVKPV HFACSDALPC IDVSLTTIEL KPVQAQYHMY 480 DPFCWQTFGE LNTPTTPPID CLQIGKPSSN RPQSDHDVC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 8.0e-64 | 104 | 470 | 372 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-65 | 100 | 471 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 6.0e-72 | 98 | 471 | 378 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-73 | 135 | 470 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-84 | 104 | 498 | 400 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 519 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_564758.2 | 0 | 4 | 519 | 7 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 519 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 519 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 519 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-24 | 197 | 421 | 113 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 4e-21 | 105 | 469 | 29 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4e-21 | 105 | 469 | 29 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4e-21 | 105 | 469 | 29 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4e-21 | 105 | 469 | 29 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |