Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29633.m000913 |
Family | PL1 |
Protein Properties | Length: 424 Molecular Weight: 47422.1 Isoelectric Point: 7.4717 |
Chromosome | Chromosome/Scaffold: 29633 Start: 184197 End: 185719 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 138 | 343 | 0 |
IQDEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHIANGPCITIHYATNIIIHGLNIHDCKQGGNGDIRDSPDHFGWWTQSDGDGVSIFASKHIWVD HCSLSNCHDGLIDAIHGSTAITLSNNFFTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 424 Download |
MSADLSVFSL FLFSLVITPH LVLSSPLPDP ELVVQDVHRS INASRRNLAY LSCGTGNPID 60 DCWRCDPNWE TNRKRLADCA IGFGKDAIGG RNGRFYVVTX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXKP GTLRHAVIQD EPLWIIFKRD MVIQLKQELV MNSFKTIDGR GASVHIANGP 180 CITIHYATNI IIHGLNIHDC KQGGNGDIRD SPDHFGWWTQ SDGDGVSIFA SKHIWVDHCS 240 LSNCHDGLID AIHGSTAITL SNNFFTHHDK VMLLGHSDSY TQDKDMQVTI AFNHFGEGLV 300 QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA SPTINSQGNR FLAPDAREKK EVTKHEDAPE 360 SEWRHWNWRS EGDQLLNGAF FRQSGAGASS TYARASSLSA RPSSLVNSIT RTAGALNCRK 420 GSRC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-28 | 163 | 341 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-75 | 156 | 341 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-80 | 150 | 345 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 22 | 424 | 13 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
RefSeq | XP_002268976.1 | 0 | 24 | 424 | 22 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 5 | 424 | 4 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318694.1 | 0 | 18 | 424 | 16 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 1 | 424 | 1 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 57 | 416 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 57 | 416 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-18 | 145 | 343 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 2e-16 | 205 | 353 | 177 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 4e-16 | 205 | 353 | 177 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |