Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29690.m000409 |
Family | PL1 |
Protein Properties | Length: 312 Molecular Weight: 35259.7 Isoelectric Point: 6.9267 |
Chromosome | Chromosome/Scaffold: 29690 Start: 8097 End: 11323 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 61 | 240 | 0 |
IVFEVSGTIHLNSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFESGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRQSTDITVSR CFFTQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA |
Full Sequence |
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Protein Sequence Length: 312 Download |
MASLPYADVD FTIRAMAGRA EGFGRLAIGG LHGPVYSVTT LADDGPGSLR DGCRRREPLW 60 IVFEVSGTIH LNSYLSVSSY KTIDGRGQRI KFTGKGLRLK ECEHIIICNL EFESGRGHDV 120 DGIQIKPNSK HIWIDRCSLR DYDDGLIDIT RQSTDITVSR CFFTQHDKTM LIGADPSHVG 180 DRCIRVTIHH CFFDGTRQRH PRLRFGKVHL YNNYTRNWGI YAVCASVESQ IYSQCNIYEA 240 GEKKKTFEYY TEKAADKEET KSGLVRSEGD AFLNGAQPCF LTGNGEECVF HPSEYYQTWT 300 MEAPSDSLKE VI |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00544 | Pec_lyase_C | 5.0e-38 | 62 | 236 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
COG3866 | PelB | 2.0e-42 | 29 | 312 | 303 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
smart00656 | Amb_all | 4.0e-67 | 75 | 241 | 179 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB75748.1 | 0 | 1 | 312 | 1 | 322 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_191074.2 | 0 | 1 | 312 | 1 | 312 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002276049.1 | 0 | 1 | 312 | 1 | 312 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311134.1 | 0 | 1 | 312 | 1 | 312 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526780.1 | 0 | 1 | 312 | 1 | 312 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 6e-40 | 16 | 297 | 21 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 6e-40 | 16 | 297 | 21 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1vbl_A | 9e-26 | 77 | 238 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3zsc_A | 1e-25 | 62 | 238 | 49 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 3vmw_A | 3e-21 | 57 | 239 | 46 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY277275 | 307 | 4 | 310 | 0 |
DY275282 | 314 | 1 | 312 | 0 |
FC884660 | 310 | 1 | 310 | 0 |
CX546286 | 294 | 7 | 300 | 0 |
FC884660 | 31 | 283 | 312 | 0.17 |
Sequence Alignments (This image is cropped. Click for full image.) |
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