y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29693.m002071 |
Family | CBM43 |
Protein Properties | Length: 282 Molecular Weight: 28730.1 Isoelectric Point: 3.7831 |
Chromosome | Chromosome/Scaffold: 29693 Start: 748958 End: 750483 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 115 | 197 | 1.4e-34 |
WCIASPTASETALQVALDYACGYGGADCAAIQSGGSCYNPNTVRDHASYAFNSYYQKNPIPTSCVFGGTAQLTSTDPSNGNCH |
Full Sequence |
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Protein Sequence Length: 282 Download |
MYPPTPSLLC YSNTCSIVAE TLPLEAIQDD RIADNQENQI PFSSPVSTTQ LDTVPTVNPT 60 TTPIVNPIDS PPAPVAIDSP PAPVAIDSPP APAAVTTTPP MPPSTTTPSS SGGQWCIASP 120 TASETALQVA LDYACGYGGA DCAAIQSGGS CYNPNTVRDH ASYAFNSYYQ KNPIPTSCVF 180 GGTAQLTSTD PSNGNCHFAA SSSTPSISSP VNPTPTPTIP TPTITTPTTM TPPMTTTPGG 240 PTIFGVAEPT GLPSSATSIS CSLLLLYSMT AIVGSLLAAN HL 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-11 | 114 | 184 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-27 | 114 | 198 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94231.1 | 0 | 18 | 282 | 26 | 304 | unknown [Populus trichocarpa] |
EMBL | CBI30817.1 | 0 | 111 | 282 | 31 | 195 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_174231.2 | 0 | 114 | 282 | 147 | 315 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002271903.1 | 0 | 8 | 282 | 12 | 290 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519744.1 | 0 | 1 | 282 | 1 | 282 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-16 | 113 | 203 | 11 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GE635169 | 171 | 112 | 282 | 0 |
EX270033 | 171 | 112 | 282 | 1.96182e-44 |
EX293226 | 156 | 112 | 267 | 8.99999e-40 |
CN550472 | 89 | 112 | 200 | 4e-38 |
EG427499 | 169 | 114 | 282 | 6e-34 |
Sequence Alignments (This image is cropped. Click for full image.) |
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