Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29724.m000839 |
Family | CBM43 |
Protein Properties | Length: 249 Molecular Weight: 26548.5 Isoelectric Point: 8.1051 |
Chromosome | Chromosome/Scaffold: 29724 Start: 306662 End: 309142 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 163 | 245 | 2.3e-36 |
WCVAKPTVPDSIVQEALDYACGSGADCKSIQPNGPCFQPNTLVSHASYAFNSYWQKAKAAGGTCDFGGTAMLVTNDPSFDNCN |
Full Sequence |
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Protein Sequence Length: 249 Download |
MDPKSYLRKL SIIVTISSIF HFNEARLFPD QVLKRPKVLE SVEQVEPTNG KPYGLPSPLY 60 LPPLASPVPV PAPAGSPLSS VAPPPIESML PPFPPSTNIS IQSPPKSPPK NSASPPMYNT 120 PIPSPPQYML SPPKLVPSPP GPVVQTPPST PPPPHKKPQF AVWCVAKPTV PDSIVQEALD 180 YACGSGADCK SIQPNGPCFQ PNTLVSHASY AFNSYWQKAK AAGGTCDFGG TAMLVTNDPS 240 FDNCNFTDN |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 4.0e-28 | 163 | 233 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-45 | 163 | 246 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78496.1 | 0 | 24 | 249 | 42 | 262 | hypothetical protein [Vitis vinifera] |
EMBL | CBI34142.1 | 0 | 24 | 249 | 33 | 253 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264622.1 | 0 | 24 | 244 | 42 | 258 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002516415.1 | 9.94922e-44 | 161 | 249 | 175 | 263 | conserved hypothetical protein [Ricinus communis] |
RefSeq | XP_002520569.1 | 0 | 1 | 249 | 1 | 249 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 8e-21 | 163 | 246 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG679312 | 242 | 1 | 242 | 0 |
EG665507 | 247 | 3 | 249 | 0 |
EG679311 | 157 | 93 | 249 | 0 |
CK096422 | 90 | 160 | 249 | 0 |
CO982195 | 87 | 160 | 246 | 1.4013e-45 |
Sequence Alignments (This image is cropped. Click for full image.) |
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