y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29726.m004090 |
Family | GH28 |
Protein Properties | Length: 412 Molecular Weight: 44464.3 Isoelectric Point: 10.2 |
Chromosome | Chromosome/Scaffold: 29726 Start: 1149137 End: 1151273 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 400 | 0 |
WKATCNWAGNARLVVPGGEFLASSMVFQGPCKNPAPIVQIIGTIKAVSDLSNYAEDFWISFEKVNGLIVTGTGTVDGQGQNVWKYNDGGGSIFPANIKLL HVSNGIIRQINSVNPMGFHIGIVLSQNIRARRLHLNAPESSPNTDGFHISQSNQVKIAKSVIATGDDCVGMIHGSTDISIKKVTCGPGHGISIGSLGKYP DEKDVRGILVTNCTLKNTDNGIRIKTWGGSPPSVATSLTFQDIIMDNVRHPIIIDQSYGSKSAPSRVKISNVKYMNIRGTTNSEVGVDIQCSKQVPCEGV RLSNINLKYIGGKKLPFSSSCLNARV |
Full Sequence |
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Protein Sequence Length: 412 Download |
MAMALTTNLL ANAILLLFLA TASCEAKGMR LRRAIRPGPR LGHKRNPNEK VFNVLQFGAK 60 HDPRKDNALA FIQAWKATCN WAGNARLVVP GGEFLASSMV FQGPCKNPAP IVQIIGTIKA 120 VSDLSNYAED FWISFEKVNG LIVTGTGTVD GQGQNVWKYN DGGGSIFPAN IKLLHVSNGI 180 IRQINSVNPM GFHIGIVLSQ NIRARRLHLN APESSPNTDG FHISQSNQVK IAKSVIATGD 240 DCVGMIHGST DISIKKVTCG PGHGISIGSL GKYPDEKDVR GILVTNCTLK NTDNGIRIKT 300 WGGSPPSVAT SLTFQDIIMD NVRHPIIIDQ SYGSKSAPSR VKISNVKYMN IRGTTNSEVG 360 VDIQCSKQVP CEGVRLSNIN LKYIGGKKLP FSSSCLNARV SYAGMQFPPP CR 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 4.0e-71 | 51 | 411 | 369 | + polygalacturonase | ||
PLN03010 | PLN03010 | 2.0e-72 | 48 | 388 | 351 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-78 | 87 | 401 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-78 | 30 | 411 | 399 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-117 | 43 | 411 | 380 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-17 | 133 | 397 | 63 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-17 | 133 | 397 | 63 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-17 | 133 | 397 | 63 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-17 | 133 | 397 | 63 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-17 | 133 | 397 | 63 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |