Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29726.m004105 |
Family | GH28 |
Protein Properties | Length: 454 Molecular Weight: 49308.6 Isoelectric Point: 5.7297 |
Chromosome | Chromosome/Scaffold: 29726 Start: 1218532 End: 1221661 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 413 | 0 |
DKGGAKLYVPPGRWLTGSFNLTSHLTLFLEKGAVILGSQDPSHYDLIEPLPSYGRGIELPGGRYRSLINGYKLRDVVITGDNGTIDGQGSVWWDWFNSHS LNYSRPHLVEFIESERIVVSNLTFLNAPAYNIHPVYCSNVLVQNMSLSAPPESPQTIGIVPDSSNNVCIEESIIKMGYDAISLKSGWDEYGIAYDRATRD VHIRRVHLQSSSGSSIAFGSEMSGGISNVHVEQVHLYNSFSGIGFRTTKGRGGYIKRIFISDVELENINLALGAIGDHGLHPDDKFDPKAVPVVDQITLQ NLTGTNISTAGNFTGIQDSPFTSLCLFNITLMVSSSNSWTCSNV |
Full Sequence |
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Protein Sequence Length: 454 Download |
MPVALLLLLA LSNAIVIYGE ESSGQCDNKP SLDPRPHSVS ILEFGAVGDG KTLNTISFQN 60 AIFYLKSFAD KGGAKLYVPP GRWLTGSFNL TSHLTLFLEK GAVILGSQDP SHYDLIEPLP 120 SYGRGIELPG GRYRSLINGY KLRDVVITGD NGTIDGQGSV WWDWFNSHSL NYSRPHLVEF 180 IESERIVVSN LTFLNAPAYN IHPVYCSNVL VQNMSLSAPP ESPQTIGIVP DSSNNVCIEE 240 SIIKMGYDAI SLKSGWDEYG IAYDRATRDV HIRRVHLQSS SGSSIAFGSE MSGGISNVHV 300 EQVHLYNSFS GIGFRTTKGR GGYIKRIFIS DVELENINLA LGAIGDHGLH PDDKFDPKAV 360 PVVDQITLQN LTGTNISTAG NFTGIQDSPF TSLCLFNITL MVSSSNSWTC SNVIGYSDSV 420 FPVPCPELKS PYSNSSSACY SLLLLNSYGK SASL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-14 | 37 | 426 | 413 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-17 | 137 | 413 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 3.0e-20 | 37 | 428 | 405 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-21 | 36 | 412 | 389 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 6.0e-41 | 39 | 390 | 392 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 12 | 426 | 12 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 12 | 426 | 14 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 14 | 434 | 14 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 454 | 3 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 1 | 454 | 1 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5e-32 | 37 | 387 | 26 | 397 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5e-32 | 37 | 387 | 26 | 397 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5e-32 | 37 | 387 | 26 | 397 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5e-32 | 37 | 387 | 26 | 397 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000001 | 83 | 337 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |