y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29736.m002032 |
Family | PL1 |
Protein Properties | Length: 440 Molecular Weight: 49425.4 Isoelectric Point: 9.6891 |
Chromosome | Chromosome/Scaffold: 29736 Start: 223996 End: 226234 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 153 | 360 | 0 |
VIQNEPLWIIFARSMIIRLNQELMISSNKTIDARGANVHIAGGAGLTLQFVQNVIIHGIRIHDIVSGSGGLVRDSVDHYGFRTKSDGDGISIFGSSNIWI DHVSMSNCQDGLIDAIMGSTSITISNCHFTNHNEVMLFGASDGYSADTIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSRKPTIIS QGNRFIAP |
Full Sequence |
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Protein Sequence Length: 440 Download |
MVIMNKSLFT FVLFASFAVI FPTLHANIGD FDEYWKQKAD IAREAAYRSY NPNPFNVSNQ 60 LNYQVNKAVS GTNSTRRNLM RRKGGGPCKA TNPIDRCWRC DPKWALNRKR LVECVLGFGH 120 STTGGKDGKF YIVTDPSDND MVNPKPGTLR HAVIQNEPLW IIFARSMIIR LNQELMISSN 180 KTIDARGANV HIAGGAGLTL QFVQNVIIHG IRIHDIVSGS GGLVRDSVDH YGFRTKSDGD 240 GISIFGSSNI WIDHVSMSNC QDGLIDAIMG STSITISNCH FTNHNEVMLF GASDGYSADT 300 IMQITVAFNH FGRGLVQRMP RCRWGFFHVV NNDYTHWLMY AIGGSRKPTI ISQGNRFIAP 360 NNIFSKEVTK REYSLESEWK NWNWRSDRDL MMNGAVFVES GKPITHDFSR LQLIKAKPGT 420 FVTRLTRYSG ALDCFVGKPC 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-17 | 27 | 79 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 4.0e-26 | 122 | 357 | 252 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-59 | 173 | 357 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-69 | 167 | 361 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 19 | 440 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 19 | 440 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 13 | 440 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 9 | 440 | 7 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 440 | 1 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 92 | 432 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 92 | 432 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-18 | 161 | 348 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000002 | 175 | 357 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000001 | 170 | 396 | 71 | 313 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |