Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29738.m001005 |
Family | GH28 |
Protein Properties | Length: 387 Molecular Weight: 41659.5 Isoelectric Point: 8.4811 |
Chromosome | Chromosome/Scaffold: 29738 Start: 58598 End: 66081 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 373 | 0 |
AAACGSTDSTMIYVPKGRYLLGSMSFKGGCKSHSITIRIDGTLVAPEDYLILGKATSWLSFEGVDGVSIIGGALDAKGSTLWDCKAKGTDCPTGATTLRF TNSNNIRINGLLSLNSQMFHIAINGCQDVHVEGLKVIASRDSPNTDGFHVQSSNNVVIMNSVIKTGDDCISIGPGTKNLWIEGVKCGPGHGISIGSLAKD TEEEGVQNVTVKRTIFADTQNGFRIKSWARHSNGFVKRIRFIGAIMSNVQNPIIIDQHYCPHNINCPNQVSGIKINDVIYQGIRGTSATPVAIKFDCSSK FPCGGIRLHNVNLTYSNQAAQTFCVNV |
Full Sequence |
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Protein Sequence Length: 387 Download |
MASLFFLIFF ALYVNSSFAT DNYNVLSYGA KPNGITDSTK AFLDAWAAAC GSTDSTMIYV 60 PKGRYLLGSM SFKGGCKSHS ITIRIDGTLV APEDYLILGK ATSWLSFEGV DGVSIIGGAL 120 DAKGSTLWDC KAKGTDCPTG ATTLRFTNSN NIRINGLLSL NSQMFHIAIN GCQDVHVEGL 180 KVIASRDSPN TDGFHVQSSN NVVIMNSVIK TGDDCISIGP GTKNLWIEGV KCGPGHGISI 240 GSLAKDTEEE GVQNVTVKRT IFADTQNGFR IKSWARHSNG FVKRIRFIGA IMSNVQNPII 300 IDQHYCPHNI NCPNQVSGIK INDVIYQGIR GTSATPVAIK FDCSSKFPCG GIRLHNVNLT 360 YSNQAAQTFC VNVIGKRIGH VRPDGCL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-85 | 24 | 383 | 367 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-87 | 50 | 373 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-93 | 25 | 387 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-99 | 4 | 386 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 9.0e-137 | 3 | 387 | 386 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28449.1 | 0 | 19 | 387 | 27 | 397 | unknown [Arabidopsis thaliana] |
RefSeq | NP_176735.1 | 0 | 19 | 387 | 27 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002262690.1 | 0 | 16 | 387 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 4 | 387 | 12 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 1 | 387 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 2e-16 | 19 | 376 | 17 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000000000004 | 105 | 305 | 63 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000004 | 105 | 305 | 63 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000004 | 105 | 305 | 63 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000004 | 105 | 305 | 63 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |