Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29739.m003728 |
Family | GH28 |
Protein Properties | Length: 494 Molecular Weight: 55382.6 Isoelectric Point: 9.1461 |
Chromosome | Chromosome/Scaffold: 29739 Start: 1047635 End: 1052036 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 108 | 455 | 0 |
KGGGQLNVPPGRWVTAPFNLTSHMTLFLAEDSIILGIEDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQTWWKKYRQKLL NHTRGPLVQIMWSSDILITNITLRDSPFWTLHPYDCKNVTIRNVTILAPVLEAPNTDGIDPDSCEDMVIEDCYISVGDDGIAIKSGWDQYGIAYRRPSTN ILIRNLVVRSMVSAGISIGSEMSGGVSNITVENLLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIVIKTDYNEHPDEGYDPKAVPVLRDISFT GVHGQGVRVPVRIHGSEEIPVRNVTFQDMSVGLTYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 494 Download |
MMLETASLGR LHYQRLELKR WVPTFFSSHK TLFTVLWIAA FASVFVWQRN VVGDGFAVFF 60 KASPMRPMPK LRPVAFNLTD FGGVGDGVTL NTEAFERAVL AISKLGKKGG GQLNVPPGRW 120 VTAPFNLTSH MTLFLAEDSI ILGIEDEKYW PLMPPLPSYG YGREHPGPRY GSLIHGQNLK 180 DVVITGHNGT INGQGQTWWK KYRQKLLNHT RGPLVQIMWS SDILITNITL RDSPFWTLHP 240 YDCKNVTIRN VTILAPVLEA PNTDGIDPDS CEDMVIEDCY ISVGDDGIAI KSGWDQYGIA 300 YRRPSTNILI RNLVVRSMVS AGISIGSEMS GGVSNITVEN LLVWSSRRAV RIKTAPGRGG 360 YVRHITYRNL TFDNVRVGIV IKTDYNEHPD EGYDPKAVPV LRDISFTGVH GQGVRVPVRI 420 HGSEEIPVRN VTFQDMSVGL TYKKKHIFQC AFVQGRVIGT IFPAPCENLD RYDEQGRLVK 480 RSVSQNLTDI DYDF |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-23 | 73 | 438 | 386 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-29 | 64 | 466 | 424 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 8.0e-33 | 75 | 438 | 376 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-40 | 174 | 445 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 5.0e-68 | 49 | 401 | 376 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 2 | 494 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 2 | 494 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 2 | 494 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 2 | 494 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 494 | 1 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-17 | 120 | 433 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 449 | 2 | 450 | 0 |
FN769574 | 320 | 150 | 469 | 0 |
FE707848 | 301 | 77 | 377 | 0 |
DY291517 | 344 | 20 | 360 | 0 |
ES817974 | 305 | 54 | 358 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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