| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29743.m000300 |
| Family | PL1 |
| Protein Properties | Length: 203 Molecular Weight: 23150.4 Isoelectric Point: 8.7843 |
| Chromosome | Chromosome/Scaffold: 29743 Start: 305085 End: 306155 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 16 | 125 | 3.1e-24 |
| VPLGQIDGDAIRLVSASKIRIDHNTLYAYQDNLLDVTRGSTDVTISNNWFKDQDKVMLLGHDNGYVRDKNMKDSPWLCTFNHNLYQVWQQYAIGGSMNSS IKSEANYFIA | |||
| Full Sequence |
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| Protein Sequence Length: 203 Download |
| MAVGPSSVRG PNGQMVPLGQ IDGDAIRLVS ASKIRIDHNT LYAYQDNLLD VTRGSTDVTI 60 SNNWFKDQDK VMLLGHDNGY VRDKNMKDSP WLCTFNHNLY QVWQQYAIGG SMNSSIKSEA 120 NYFIAPKEGK KETRQSLTTA STKIPCSRCE VCQINNKLIW CFKVSENNWM LSQDSRTTMK 180 MNRLTDTKLI VIKQLHEFNL CLY |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-10 | 14 | 123 | 143 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-23 | 8 | 123 | 144 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-28 | 22 | 127 | 137 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_196490.1 | 0 | 5 | 182 | 102 | 294 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002299118.1 | 0 | 2 | 132 | 130 | 279 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 2 | 132 | 130 | 278 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526328.1 | 0 | 1 | 203 | 1 | 203 | hypothetical protein RCOM_0720660 [Ricinus communis] |
| RefSeq | XP_002527354.1 | 0 | 2 | 132 | 158 | 306 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 4e-23 | 17 | 152 | 144 | 291 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 4e-23 | 17 | 152 | 144 | 291 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.0003 | 20 | 125 | 113 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.0004 | 24 | 101 | 190 | 280 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.0004 | 22 | 100 | 119 | 201 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 149 | 5 | 132 | 1.4013e-45 |
| FG470156 | 143 | 8 | 132 | 4.00001e-40 |
| FG468822 | 143 | 8 | 132 | 5e-40 |
| FG468635 | 143 | 8 | 132 | 5e-40 |
| FD757999 | 150 | 5 | 133 | 1e-38 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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