Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29761.m000417 |
Family | GH28 |
Protein Properties | Length: 474 Molecular Weight: 51608.8 Isoelectric Point: 6.07 |
Chromosome | Chromosome/Scaffold: 29761 Start: 78003 End: 81395 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 131 | 463 | 0 |
KAACSSAGSVLVVPDNNYLIKPIRFSGPCKSNLTLQIYGTIEASDDRSDYEEDDRHWIVFERVQNFLVEGGGTIDGNGKIWWQNSCKLNKDLPCKDAPTA LTFYKCKNLVVENLKIQNAQQMHVSFQGSKNVKISNLIVTSPEESPNTDGIHVTSTQNIQITDCVIGTGDDCISIVSGSQNVQAMNITCGPGHGISIGSL GSGNSKAHVSGVTINGAKLSGTTNGVRIKTWQGGSGNASNIKFQNIKMDNVSNPIIIDQNYCDQDKPCKEQKSAVQVKDVVYKNIKGTSASHVAIKFDCS NSHPCEGILLQDVSLERQRGDETAIALCNNVDV |
Full Sequence |
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Protein Sequence Length: 474 Download |
MALQKPPFNN LYSLFFLVNI LSFIIVMTIP SYNCLQHHDT LNDYLQEASG YGSPHHHHHH 60 QQEAYPSYFS SIDDGQSNNE DLILMRANVL DLNIFDKVGT TSTSAKTFSV DAFGAKADGS 120 DDTKAFQEAW KAACSSAGSV LVVPDNNYLI KPIRFSGPCK SNLTLQIYGT IEASDDRSDY 180 EEDDRHWIVF ERVQNFLVEG GGTIDGNGKI WWQNSCKLNK DLPCKDAPTA LTFYKCKNLV 240 VENLKIQNAQ QMHVSFQGSK NVKISNLIVT SPEESPNTDG IHVTSTQNIQ ITDCVIGTGD 300 DCISIVSGSQ NVQAMNITCG PGHGISIGSL GSGNSKAHVS GVTINGAKLS GTTNGVRIKT 360 WQGGSGNASN IKFQNIKMDN VSNPIIIDQN YCDQDKPCKE QKSAVQVKDV VYKNIKGTSA 420 SHVAIKFDCS NSHPCEGILL QDVSLERQRG DETAIALCNN VDVAQVGVVS PHCP 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 4.0e-77 | 98 | 471 | 377 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-98 | 104 | 474 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-116 | 134 | 461 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-134 | 104 | 471 | 372 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-144 | 73 | 473 | 406 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 1 | 474 | 1 | 456 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 1 | 473 | 1 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002308956.1 | 0 | 23 | 474 | 1 | 443 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322711.1 | 0 | 32 | 473 | 22 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 1 | 474 | 1 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-26 | 116 | 445 | 19 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-19 | 201 | 418 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-19 | 201 | 418 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-19 | 201 | 418 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-19 | 201 | 418 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |