y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29769.m000461 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 42433.9 Isoelectric Point: 9.208 |
Chromosome | Chromosome/Scaffold: 29769 Start: 273898 End: 275436 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 381 | 0 |
KAACSTPGASRILIPHAKYALRDVLLEGPCKGSMVLQIKGTLMAPSDPSEHHSQGWITFQHVDHLTISGGNLDGRGKIAWGKNTCRTNVNCKNLPMNLRF DFVTNTIIEDLTSRDSKNFHMNLIGCQNFTLQRIKIIAPGDSANTDGIHIGRSNGVNIIDSKIGTGDDCISIGDGSRNIKITGVRCGPGHGISIGSLGKY KNEEPVSGVYVKKCDLINTTNGIRIKSWPGLYSGTATDLHFEDISMNNVSNAILIDQMYCPWNHCNSKASSNVKISKVTFSNIKGTSSIPTIVKLLCSKG LPCEGVELNNINVVYKGPEGPAKSECTNVKPK |
Full Sequence |
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Protein Sequence Length: 392 Download |
MKSKLNILTI FVLLSISLKI RAEKVFDVKN FGATPSQKND ISKALLDAWK AACSTPGASR 60 ILIPHAKYAL RDVLLEGPCK GSMVLQIKGT LMAPSDPSEH HSQGWITFQH VDHLTISGGN 120 LDGRGKIAWG KNTCRTNVNC KNLPMNLRFD FVTNTIIEDL TSRDSKNFHM NLIGCQNFTL 180 QRIKIIAPGD SANTDGIHIG RSNGVNIIDS KIGTGDDCIS IGDGSRNIKI TGVRCGPGHG 240 ISIGSLGKYK NEEPVSGVYV KKCDLINTTN GIRIKSWPGL YSGTATDLHF EDISMNNVSN 300 AILIDQMYCP WNHCNSKASS NVKISKVTFS NIKGTSSIPT IVKLLCSKGL PCEGVELNNI 360 NVVYKGPEGP AKSECTNVKP KIGIRTDALH GC 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-82 | 15 | 377 | 370 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-90 | 2 | 377 | 380 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-93 | 14 | 362 | 356 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-115 | 53 | 379 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-127 | 18 | 381 | 369 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 17 | 382 | 22 | 384 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 17 | 382 | 22 | 384 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 8 | 382 | 13 | 384 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526191.1 | 0 | 1 | 392 | 1 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002526193.1 | 0 | 1 | 392 | 1 | 392 | hypothetical protein RCOM_0764760 [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.000000000000001 | 187 | 378 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000001 | 187 | 378 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000001 | 187 | 378 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000001 | 187 | 378 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.000000000000001 | 187 | 378 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |