| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29776.m000480 |
| Family | AA7 |
| Protein Properties | Length: 419 Molecular Weight: 46475.4 Isoelectric Point: 8.9361 |
| Chromosome | Chromosome/Scaffold: 29776 Start: 100877 End: 102136 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 69 | 291 | 0 |
| ATLNPLAIIAAKHESHVQATVICAKSHGLQIRIRSGGHDFEGLSYQSSVPFVILDMFNLRTINIDIANETAWVQAGATLGELYYHIANASKTHAFPGGVC PTVGLGGYVSGGGYGNMMRKYGLSVDNVIDARLVDVRGNILTRDSMGEDLFWAIRGGGGASFGVILSWKIKLVQIPARVTVFQVDRTLEEGATDIVYRWQ QVASKLDKELFIRINSQVTNSTV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 419 Download |
| MKVLKLLLLV LLPVSAVSSA PVLDAFLQCL PNHIHHSIPI SEAIYTPKDL SFQCVLQALV 60 RNRRFLSSAT LNPLAIIAAK HESHVQATVI CAKSHGLQIR IRSGGHDFEG LSYQSSVPFV 120 ILDMFNLRTI NIDIANETAW VQAGATLGEL YYHIANASKT HAFPGGVCPT VGLGGYVSGG 180 GYGNMMRKYG LSVDNVIDAR LVDVRGNILT RDSMGEDLFW AIRGGGGASF GVILSWKIKL 240 VQIPARVTVF QVDRTLEEGA TDIVYRWQQV ASKLDKELFI RINSQVTNST VRQDEKTITA 300 SFVGLFLGRR DKLLSLMNLS FPELGLQEKD CNEVSWVEST LFWAQFPKGT SIDVLLNRTL 360 QAQVSIKGKS DYVKMVISKE GLKNIWKMLL KVEKMCMQWN PYGGRMSEIS NTETPFXXD 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR00387 | glcD | 0.005 | 86 | 244 | 175 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| PRK11230 | PRK11230 | 0.001 | 33 | 264 | 256 | + glycolate oxidase subunit GlcD; Provisional | ||
| COG0277 | GlcD | 2.0e-18 | 73 | 267 | 204 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 2.0e-22 | 73 | 210 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 24 | 416 | 5 | 406 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 26 | 416 | 13 | 388 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 26 | 416 | 13 | 388 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 24 | 416 | 9 | 388 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 24 | 416 | 9 | 388 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
