| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29812.m000195 |
| Family | CBM22 |
| Protein Properties | Length: 569 Molecular Weight: 64025.1 Isoelectric Point: 6.7537 |
| Chromosome | Chromosome/Scaffold: 29812 Start: 16004 End: 18716 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 44 | 159 | 3.6e-21 |
| IIMNPELNDGLKGWSAFGDAKIEHREFEGNKFIVAHTRATPYDSPSQDLYLLKNRLYTFSAWIQVSEGSVPVSAIFKTKNGFKHAGAIVAESNCWSMLKG GLTVDASGPAQLYFES | |||
| GH10 | 218 | 483 | 0 |
| QKKTSFPFGCAINKNILSNPDYQNWFTSRFTVTVFENEMKWYSTERTRGNLDYSVPDAMIQFAKQHNIAVRGHNVFWDDPKFQPGWVNSLSQSDLNRATI NRLNSVMSRYKGQVIGWDVVNENLHFNFFESKLGQNASSVFYNLAQKADGSTTLFLNEYNTIEESGDGNASPAKYLQKLRDIKSFPGNEILNLAIGLEAH FSTPNLPYMRSSIDTLAAANFPIWLTEVDVQSNPNQAQYLEQVLTEVHSHPKVAGIVIWSAWSPQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 569 Download |
| MVQLLLWFSI LLLKGYNANA LPYDYTASIE CLARPHEAQY HGGIIMNPEL NDGLKGWSAF 60 GDAKIEHREF EGNKFIVAHT RATPYDSPSQ DLYLLKNRLY TFSAWIQVSE GSVPVSAIFK 120 TKNGFKHAGA IVAESNCWSM LKGGLTVDAS GPAQLYFESK NTSVEIWVDS ISLQPFTEKQ 180 WKSHQDHSIE KNRKAKVRIQ AVDKQGNPLI NANISIQQKK TSFPFGCAIN KNILSNPDYQ 240 NWFTSRFTVT VFENEMKWYS TERTRGNLDY SVPDAMIQFA KQHNIAVRGH NVFWDDPKFQ 300 PGWVNSLSQS DLNRATINRL NSVMSRYKGQ VIGWDVVNEN LHFNFFESKL GQNASSVFYN 360 LAQKADGSTT LFLNEYNTIE ESGDGNASPA KYLQKLRDIK SFPGNEILNL AIGLEAHFST 420 PNLPYMRSSI DTLAAANFPI WLTEVDVQSN PNQAQYLEQV LTEVHSHPKV AGIVIWSAWS 480 PQGCYRMCLT DNNFKNLPTG DVVDKLMGKW SGVKSLSGMT DADGFFETSL FQGDYDVTIH 540 NQASNSSFDQ KIELGPTDKK PLLLQLVQS |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 8.0e-6 | 51 | 163 | 123 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-30 | 218 | 447 | 242 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 9.0e-48 | 220 | 476 | 276 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 4.0e-75 | 256 | 503 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN10199.1 | 0 | 4 | 567 | 13 | 580 | endoxylanase [Carica papaya] |
| RefSeq | XP_002264556.1 | 0 | 19 | 568 | 108 | 655 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002264605.1 | 0 | 15 | 566 | 19 | 572 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313180.1 | 0 | 29 | 539 | 1 | 510 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532418.1 | 0 | 1 | 569 | 1 | 569 | Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1v0n_A | 3e-28 | 225 | 476 | 16 | 266 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1v0m_A | 3e-28 | 225 | 476 | 16 | 266 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1v0l_A | 3e-28 | 225 | 476 | 16 | 266 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1v0k_A | 3e-28 | 225 | 476 | 16 | 266 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1od8_A | 3e-28 | 225 | 476 | 16 | 266 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
