Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29812.m000196 |
Family | GH10 |
Protein Properties | Length: 550 Molecular Weight: 62207.8 Isoelectric Point: 5.5396 |
Chromosome | Chromosome/Scaffold: 29812 Start: 21764 End: 24438 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 197 | 457 | 0 |
QTQPSFPFGCGMNHYIVENLDYQKWFSSRFRYTTFTNEMKWYSNEKKQGKENYTIADAMVKFAKENGICIRGHNIFWDDPKYQPDWVKDLSSDNLRKAAA KRINSVVSRYSGQLIAWDVMNENLHFRFYEDKLGENASAEYYSIAHRLDPSTRLFMNEYNTIEDCQDNAPTPVNYKKKLEEILSYPGNEEILAGIGVQGH FSSAQPNLAYMRASLDILASTGLPIWLTEVDVGRGPNQAEYLEQVLREGFAHPAVEGIIMF |
Full Sequence |
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Protein Sequence Length: 550 Download |
MRISAEGCLT EPQRAQYGGG IIANPEFSTT IEGWNVFGEG EIKEGISKDG NRYIIAHKRT 60 QSLDSVSQKV QFEEGKLYSF SAWVQINEGS EDVVVVFRND GGLIRAGKVI AKNGCWSLLK 120 GGVFANFSSQ PVEILFESKN TDVELWVDNV SLQPFTMEQW RSHQNESIHK ERKSKVRFQV 180 SYVNKSAVEG AIVSIEQTQP SFPFGCGMNH YIVENLDYQK WFSSRFRYTT FTNEMKWYSN 240 EKKQGKENYT IADAMVKFAK ENGICIRGHN IFWDDPKYQP DWVKDLSSDN LRKAAAKRIN 300 SVVSRYSGQL IAWDVMNENL HFRFYEDKLG ENASAEYYSI AHRLDPSTRL FMNEYNTIED 360 CQDNAPTPVN YKKKLEEILS YPGNEEILAG IGVQGHFSSA QPNLAYMRAS LDILASTGLP 420 IWLTEVDVGR GPNQAEYLEQ VLREGFAHPA VEGIIMFVGP AIAGFNVTTL ADRDFKNTPS 480 GDVVDKLIDE WKSKRKEIKA DSEGTFEVSL FHGDYNITVK DPVTNSLTNL NYKLTKDNTS 540 SGIVHVHIND |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 0.006 | 19 | 95 | 82 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 1.0e-34 | 210 | 428 | 228 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 4.0e-50 | 202 | 484 | 308 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 6.0e-77 | 235 | 484 | 273 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 8 | 537 | 40 | 569 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 4 | 549 | 30 | 574 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313182.1 | 0 | 8 | 544 | 5 | 541 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 1 | 550 | 1 | 550 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002532422.1 | 0 | 8 | 537 | 23 | 552 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 7e-24 | 204 | 457 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1x_A | 3e-23 | 224 | 441 | 38 | 252 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1w_A | 3e-23 | 224 | 441 | 38 | 252 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1tux_A | 3e-23 | 226 | 441 | 40 | 252 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 6e-23 | 222 | 441 | 36 | 252 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV141191 | 250 | 193 | 442 | 0 |
DV134092 | 257 | 34 | 289 | 0 |
DV156862 | 249 | 40 | 287 | 0 |
DV140884 | 220 | 223 | 442 | 0 |
ES830806 | 293 | 84 | 373 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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