y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29841.m002825 |
Family | GH28 |
Protein Properties | Length: 424 Molecular Weight: 46599.2 Isoelectric Point: 8.7806 |
Chromosome | Chromosome/Scaffold: 29841 Start: 538828 End: 541657 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 390 | 0 |
MACSFPSRTRIVIPAGYTLLVHPVDLGGPCKSKLTLIISGTIVAPKDPAFWKGSNPRKWLYFHGVNHLTIDGGGTINGMGHRWWAQSCKINPNNPCRHAP TAMTFHKCKDLKIMNLRVVYGQQMHLSFTNCIRVTAFHLVVTSPAFSPNTDGIHISASRHVEIRDSIVRTGDDCISIVGNSSRIKIRKIACGPGHGISIG SLGKYDSSSKVHDILIDGAFLSNTDNGLRIKTWQGGSGNATEIKFQNVFMKNVSNPIIIDQYYCDSQIPCANQSSAVKVANISFIHIKGTSATEHAIRFA CSDSSPCEGLYLEDVQLLSHNGEILKSFCWE |
Full Sequence |
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Protein Sequence Length: 424 Download |
MFTGFVCVQG SFDSLLQLPQ SRLSARTRLR SKRVFFVSDF GAIGDGAAND TQAFKEAWEM 60 ACSFPSRTRI VIPAGYTLLV HPVDLGGPCK SKLTLIISGT IVAPKDPAFW KGSNPRKWLY 120 FHGVNHLTID GGGTINGMGH RWWAQSCKIN PNNPCRHAPT AMTFHKCKDL KIMNLRVVYG 180 QQMHLSFTNC IRVTAFHLVV TSPAFSPNTD GIHISASRHV EIRDSIVRTG DDCISIVGNS 240 SRIKIRKIAC GPGHGISIGS LGKYDSSSKV HDILIDGAFL SNTDNGLRIK TWQGGSGNAT 300 EIKFQNVFMK NVSNPIIIDQ YYCDSQIPCA NQSSAVKVAN ISFIHIKGTS ATEHAIRFAC 360 SDSSPCEGLY LEDVQLLSHN GEILKSFCWE AYGSSVDPVN PPPCFSYSQS FIKQKVQSES 420 FTFF 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-87 | 35 | 404 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 8.0e-88 | 33 | 411 | 381 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-100 | 62 | 376 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-123 | 13 | 376 | 370 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 1 | 424 | 424 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-25 | 129 | 322 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-20 | 68 | 364 | 24 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-20 | 68 | 364 | 24 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-20 | 68 | 364 | 24 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-20 | 68 | 364 | 24 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Sequence Alignments (This image is cropped. Click for full image.) |
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