y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29841.m002840 |
Family | GH28 |
Protein Properties | Length: 770 Molecular Weight: 83627.9 Isoelectric Point: 7.4889 |
Chromosome | Chromosome/Scaffold: 29841 Start: 625919 End: 637753 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 35 | 352 | 0 |
NDTCKDSRRPVMVVPMGKTFFVYPVTLFGPCNSSNLIVMILGTIIAPDHPNVWNGRFHGTWLAFRYVNDLTVSGNGVGVLDGRGHRWWEISCRYNKSKII SFEMCKNVNLRRISTVRSGGGHIAVFGCENVRFSILNLQSPGKSPNTDGIHISHSNFVHIHKSVIGSGDDCISMLDRSYNVNITNINCGPGHGISIGSLG SDGTKVDVQNITIRNVNFYKTTNGARIKTWQGGSGYVRNVLFENITLLNTSNPINIDQYYCPRGNCAEQASAVKVSGITFTKFKGSSFTDPAINIACSET VGCSNIVLDNIDITPSSG | |||
GH28 | 467 | 705 | 0 |
GRRPTALTFDQCNNLQLSGLTHINSAQDHIHFSGCSNVLVSDLHITAPESSPNTDGINISHSSNIQIHDCTIGTGDDCVAIGGGSSNINITGVTCGPGHG ISIGSLGKNGKSDTVEEVYVKDCTLKGTTNGLRIKTWQGGSGHARQIHFEGITLDAVDNPIIIDQYYCEHKSACKNQTSAVKVSNIFYKGVHGTSITEEA IQLRCSQSTSCSNIFLSDIDIISANQGIQTHAFCFNAYG |
Full Sequence |
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Protein Sequence Length: 770 Download |
MFSVAWSQRK YNVLSYGAVG NGIVDDTMAF MKAWNDTCKD SRRPVMVVPM GKTFFVYPVT 60 LFGPCNSSNL IVMILGTIIA PDHPNVWNGR FHGTWLAFRY VNDLTVSGNG VGVLDGRGHR 120 WWEISCRYNK SKIISFEMCK NVNLRRISTV RSGGGHIAVF GCENVRFSIL NLQSPGKSPN 180 TDGIHISHSN FVHIHKSVIG SGDDCISMLD RSYNVNITNI NCGPGHGISI GSLGSDGTKV 240 DVQNITIRNV NFYKTTNGAR IKTWQGGSGY VRNVLFENIT LLNTSNPINI DQYYCPRGNC 300 AEQASAVKVS GITFTKFKGS SFTDPAINIA CSETVGCSNI VLDNIDITPS SGIKKHSILQ 360 FHEGEIEEIL FTILSHIILT PMLRKIKELL IGIIVLAIWS KSGEAISCSI ITDVMQYGAV 420 GDGEIDDSEL RNPTNTGRKD ILVKASQVSR SCKSSPINIQ KFDEIGGRRP TALTFDQCNN 480 LQLSGLTHIN SAQDHIHFSG CSNVLVSDLH ITAPESSPNT DGINISHSSN IQIHDCTIGT 540 GDDCVAIGGG SSNINITGVT CGPGHGISIG SLGKNGKSDT VEEVYVKDCT LKGTTNGLRI 600 KTWQGGSGHA RQIHFEGITL DAVDNPIIID QYYCEHKSAC KNQTSAVKVS NIFYKGVHGT 660 SITEEAIQLR CSQSTSCSNI FLSDIDIISA NQGIQTHAFC FNAYGTASYS TPVVNCLTTS 720 LSYEGLPSQQ ESGCQSRNSQ SVKVLHFLHE QLIVVLTLLC FAFLHLLAIK 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-63 | 411 | 723 | 365 | + polygalacturonase | ||
PLN02793 | PLN02793 | 5.0e-74 | 449 | 736 | 288 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-85 | 12 | 347 | 343 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 2.0e-92 | 11 | 365 | 357 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-103 | 7 | 352 | 354 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 11 | 348 | 490 | 834 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 11 | 687 | 56 | 833 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266839.1 | 0 | 11 | 396 | 394 | 767 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266839.1 | 0 | 11 | 710 | 76 | 751 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002517618.1 | 0 | 1 | 770 | 1 | 770 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-18 | 519 | 708 | 152 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_F | 0.0000000000004 | 87 | 348 | 58 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-18 | 519 | 708 | 152 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000004 | 87 | 348 | 58 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-18 | 519 | 708 | 152 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |