y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29842.m003552 |
Family | PL1 |
Protein Properties | Length: 377 Molecular Weight: 41657 Isoelectric Point: 6.4292 |
Chromosome | Chromosome/Scaffold: 29842 Start: 257986 End: 259299 |
Description | root hair specific 14 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 97 | 298 | 0 |
LWIIFDQDMVITLENELMVNSFKTIDGRGSKIEIADGPCMTIEGVSHVIIHGISIHDCKPSKRGLVRSSASHVGERRGSDGDGIVVFASSNIWIDHCYLA RCTDGLLDVIHASTAVTISNNYFSQHDKVMLLGHNDEYSADEVMKVTVVLNHFGPGLVQRMPRVRYGYAHVANNRYEEWEMYAIGGSANPTIFSECNYFM AP |
Full Sequence |
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Protein Sequence Length: 377 Download |
MFALNLRAHA DFYKPRPLSS YLPTNTETVF NTIDSCWRTE SNWASNRQAL ADCAVGFGKA 60 TLGGKDGDIY VVTTPDDDPV DPKPGTLRYG VIQTEPLWII FDQDMVITLE NELMVNSFKT 120 IDGRGSKIEI ADGPCMTIEG VSHVIIHGIS IHDCKPSKRG LVRSSASHVG ERRGSDGDGI 180 VVFASSNIWI DHCYLARCTD GLLDVIHAST AVTISNNYFS QHDKVMLLGH NDEYSADEVM 240 KVTVVLNHFG PGLVQRMPRV RYGYAHVANN RYEEWEMYAI GGSANPTIFS ECNYFMAPND 300 PNIKQVTKRE VPGGWKNWKW RSSRDIFMNG AYFVQSGYGS CAPRYSRDQS FTVAPGTLVP 360 ALTSDAGPLT CSVGKAC 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-25 | 168 | 337 | 182 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-54 | 112 | 295 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-68 | 104 | 299 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 2 | 377 | 17 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317132.1 | 0 | 1 | 377 | 16 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 3 | 377 | 18 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 1 | 377 | 1 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002518442.1 | 0 | 7 | 377 | 22 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 31 | 370 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 31 | 370 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-19 | 49 | 297 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 9e-16 | 113 | 295 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000003 | 112 | 303 | 75 | 284 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FS081523 | 247 | 132 | 377 | 0 |
FG606120 | 322 | 31 | 349 | 0 |
HO778688 | 350 | 31 | 377 | 0 |
EL465440 | 301 | 43 | 340 | 0 |
CV515415 | 210 | 168 | 377 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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