Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29848.m004639 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42478.2 Isoelectric Point: 8.0872 |
Chromosome | Chromosome/Scaffold: 29848 Start: 1091748 End: 1093914 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 380 | 0 |
NALCEATTAPLLRVPAGKTFLLQPVIFSGPCSSSRVRIQVLGSIVAPRSRDAWKNGTSESWLSFSQVLNLTISGTGQIDGQGSAWWTHPRSNHLKALHFS QCDNLILRGLTHINSPRNHISINSCIGVIISHLNIIAPKESPNTDGIDISRSSYVKIRDSNISTGDDCVAVNGNSSYIRIINVVCGPGHGISVGSLGAKG LTDTVEEVHVRNCTFNRTQNGVRIKTWQGGQGFARKISFTQITLIASENPVIIDQYYCDGEQNCKNGTTAVAVSNVIYSDIKGTSAQKEAIRLDCSEIGC TNIVMNRIYIAPSAPLVHQTEAYCQNVRG |
Full Sequence |
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Protein Sequence Length: 395 Download |
MQKVLIGLLL FCFAVSTIVV EGARPSILNV VDFGAIGDGQ TNDSMAFLQA WNALCEATTA 60 PLLRVPAGKT FLLQPVIFSG PCSSSRVRIQ VLGSIVAPRS RDAWKNGTSE SWLSFSQVLN 120 LTISGTGQID GQGSAWWTHP RSNHLKALHF SQCDNLILRG LTHINSPRNH ISINSCIGVI 180 ISHLNIIAPK ESPNTDGIDI SRSSYVKIRD SNISTGDDCV AVNGNSSYIR IINVVCGPGH 240 GISVGSLGAK GLTDTVEEVH VRNCTFNRTQ NGVRIKTWQG GQGFARKISF TQITLIASEN 300 PVIIDQYYCD GEQNCKNGTT AVAVSNVIYS DIKGTSAQKE AIRLDCSEIG CTNIVMNRIY 360 IAPSAPLVHQ TEAYCQNVRG TSNNVTPNVN CLSGS |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-82 | 25 | 361 | 348 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-85 | 55 | 378 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-111 | 23 | 395 | 385 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-113 | 28 | 395 | 372 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-127 | 27 | 395 | 372 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36306.1 | 0 | 4 | 392 | 99 | 493 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 16 | 392 | 6 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 1 | 393 | 1 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 395 | 1 | 395 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-20 | 119 | 378 | 70 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-20 | 119 | 378 | 70 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-20 | 119 | 378 | 70 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-20 | 119 | 378 | 70 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-20 | 119 | 378 | 70 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |