| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29848.m004640 |
| Family | GH28 |
| Protein Properties | Length: 363 Molecular Weight: 38938.4 Isoelectric Point: 8.4977 |
| Chromosome | Chromosome/Scaffold: 29848 Start: 1095977 End: 1099027 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 341 | 0 |
| VCTATVRGTATLEIPAGTFLLNPVKFEGPCKSNKVHLQVLGKIVAPRTIDEWRPRCKSSVWLLFRGISGLIVNGPGAIDGRGSNWWKLALQFHNCNHVKL SGLTHMNSPKVHIGVNGCKGVSISNLNISAPEDSPNTDGIGISGSTDVHISNSTIGTDKGCNDKVEDVHVQNCTFIGTQNGVRIKTWPGGSGYAKNISFE RIVLHQTKNPIIIDQHYCNGHKCTEKAVAVELSGIKYSGVEGTSASKQAITFDCAKIGCRNIAMDQINITSSSPGKQIHAFCNNAKGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 363 Download |
| MQGFFLATIL VFCVATSNLV IADGRRNFNA AEFGAIGDGQ TDNSEAFLKA WEAVCTATVR 60 GTATLEIPAG TFLLNPVKFE GPCKSNKVHL QVLGKIVAPR TIDEWRPRCK SSVWLLFRGI 120 SGLIVNGPGA IDGRGSNWWK LALQFHNCNH VKLSGLTHMN SPKVHIGVNG CKGVSISNLN 180 ISAPEDSPNT DGIGISGSTD VHISNSTIGT DKGCNDKVED VHVQNCTFIG TQNGVRIKTW 240 PGGSGYAKNI SFERIVLHQT KNPIIIDQHY CNGHKCTEKA VAVELSGIKY SGVEGTSASK 300 QAITFDCAKI GCRNIAMDQI NITSSSPGKQ IHAFCNNAKG TSTSTTPLMK RTCLACMEIE 360 RTA |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam00295 | Glyco_hydro_28 | 7.0e-66 | 63 | 339 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02188 | PLN02188 | 2.0e-67 | 4 | 339 | 388 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02793 | PLN02793 | 1.0e-73 | 25 | 356 | 386 | + Probable polygalacturonase |
| PLN03003 | PLN03003 | 4.0e-85 | 28 | 355 | 374 | + Probable polygalacturonase At3g15720 |
| PLN03010 | PLN03010 | 6.0e-95 | 26 | 350 | 361 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI36306.1 | 0 | 1 | 350 | 94 | 491 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002266797.1 | 0 | 16 | 350 | 6 | 370 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324855.1 | 0 | 1 | 355 | 1 | 395 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 6 | 347 | 5 | 387 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| RefSeq | XP_002515527.1 | 0 | 1 | 363 | 1 | 363 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.000000008 | 130 | 323 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000008 | 130 | 323 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000008 | 130 | 323 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.000000008 | 130 | 323 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.000000008 | 130 | 323 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
