Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29889.m003362 |
Family | GH28 |
Protein Properties | Length: 479 Molecular Weight: 51433.9 Isoelectric Point: 4.5302 |
Chromosome | Chromosome/Scaffold: 29889 Start: 675135 End: 677256 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 110 | 438 | 0 |
KAACAVESGVILAPSGYSFMITSTIFSGPCQPGLVFQVDGCLMPPDGPDSWPEKDSKKQWLVFYRLTDMTLTGKGTIEGNGEKWWDLPCKPHRSPNGESS KEPCDSPAMIRFFMSSNLVVSGLSIQNSPQFHMKFDGCEGVLIEKLSISSPKLSPNTDGIHIENTKTVGIYNSMISNGDDCISIGTGCSNVDIEGVTCGP SHGISIGSLGVHNSQACVSNITVSNAIIRDSDNGVRIKTWQGGTGCVSGISFQNIQMENVRNCMIIDQYYCMSKACLNQTSAVHVTDVSYRNIKGTYDVR TPPIHFACSDTVPCTNITLSEVELLPEEG |
Full Sequence |
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Protein Sequence Length: 479 Download |
MELIRGLLVI SIAVIFLLQN SSNVEGRYHY HKPKGKPSKH TGSPVSPTPD NAPAEPSVPS 60 TPANSPLVPS DPYPNDPGKS TSDCIFDVTS YGAVGDGSTD DTAAFVAAWK AACAVESGVI 120 LAPSGYSFMI TSTIFSGPCQ PGLVFQVDGC LMPPDGPDSW PEKDSKKQWL VFYRLTDMTL 180 TGKGTIEGNG EKWWDLPCKP HRSPNGESSK EPCDSPAMIR FFMSSNLVVS GLSIQNSPQF 240 HMKFDGCEGV LIEKLSISSP KLSPNTDGIH IENTKTVGIY NSMISNGDDC ISIGTGCSNV 300 DIEGVTCGPS HGISIGSLGV HNSQACVSNI TVSNAIIRDS DNGVRIKTWQ GGTGCVSGIS 360 FQNIQMENVR NCMIIDQYYC MSKACLNQTS AVHVTDVSYR NIKGTYDVRT PPIHFACSDT 420 VPCTNITLSE VELLPEEGEL VDDPFCWNAY GTEETVTIPP LNCLRDGEPE SVQEVSYGC 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-65 | 79 | 426 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-68 | 81 | 464 | 391 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-84 | 88 | 426 | 343 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-85 | 119 | 427 | 309 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-98 | 82 | 478 | 400 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 1 | 479 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 479 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 1 | 479 | 1 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 479 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 479 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-25 | 147 | 433 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-25 | 147 | 433 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-25 | 147 | 433 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-25 | 147 | 433 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-25 | 147 | 433 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |