y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29917.m001961 |
Family | GH35 |
Protein Properties | Length: 841 Molecular Weight: 93610.1 Isoelectric Point: 5.3217 |
Chromosome | Chromosome/Scaffold: 29917 Start: 178350 End: 184107 |
Description | beta-galactosidase 8 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 37 | 340 | 0 |
LVIDGKRRVLQSGSIHYPRTTPEVWPDIIRKSKEGGLDVIETYVFWNYHEPVKGQYYFEGRFDLVRFVKTIQEAGLLVHLRIGPYACAEWNYGGFPLWLH FIPGIQFRTTNELFKEEMKLFLTKIVNMMKEENLFASQGGPIILAQVENEYGNVEWAYGAAGELYVKWAAETAVSLNTSVPWVMCAQVDAPDPIINTCNG FYCDRFSPNSPSKPKMWTENYSGWFLSFGYAIPYRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLR DLHK |
Full Sequence |
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Protein Sequence Length: 841 Download |
MGSKNSLVLI LLFVSIFACS YLERGWSGKV SYDHRALVID GKRRVLQSGS IHYPRTTPEV 60 WPDIIRKSKE GGLDVIETYV FWNYHEPVKG QYYFEGRFDL VRFVKTIQEA GLLVHLRIGP 120 YACAEWNYGG FPLWLHFIPG IQFRTTNELF KEEMKLFLTK IVNMMKEENL FASQGGPIIL 180 AQVENEYGNV EWAYGAAGEL YVKWAAETAV SLNTSVPWVM CAQVDAPDPI INTCNGFYCD 240 RFSPNSPSKP KMWTENYSGW FLSFGYAIPY RPVEDLAFAV ARFFETGGTF QNYYMYFGGT 300 NFGRTAGGPL VATSYDYDAP IDEYGFIRQP KWGHLRDLHK AIKQCEEHLI SSDPIHQQLG 360 NNLEAHIYYK SSNDCAAFLA NYDSSSDANV TFNGNIYFLP AWSVSILPDC KNVIFNTAKV 420 LILNLGDDFF AHSTSVNEIP LEQIVWSWYK EEVGIWGNNS FTAPGLLEQI NTTKDISDFL 480 WYSTSISVNA DQVKDIILNI ESLGHAALVF VNKVLVGKYG NHDDASFSLT EKISLIEGNN 540 TLDLLSMMIG VQNYGPWFDV QGAGIYAVLL VGQSKVKIDL SSEKWTYQVG LEGEYFGLDK 600 VSLANSSLWT QGASPPINKS LIWYKGTFVA PEGKGPLALN LAGMGKGQAW VNGQSIGRYW 660 PAYLSPSTGC NDSCDYRGAY DSFKCLKKCG QPAQTLYHIP RTWVHPGENL LVLHEELGGD 720 PSKISVLTRT GHEICSIVSE DDPPPADSWK SSSEFKSQNP EVRLTCEQGW HIKSINFASF 780 GTPAGICGTF NPGSCHADML DIVQKACIGQ EGCSISISAA NLGDPCPGVL KRFAVEARCS 840 E 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02449 | Glyco_hydro_42 | 1.0e-5 | 52 | 188 | 155 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
pfam02140 | Gal_Lectin | 5.0e-20 | 764 | 839 | 81 | + Galactose binding lectin domain. | ||
COG1874 | LacA | 1.0e-22 | 30 | 332 | 362 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 2.0e-156 | 36 | 342 | 322 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 5 | 840 | 849 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK24373.1 | 0 | 1 | 840 | 1 | 861 | unknown [Picea sitchensis] |
EMBL | CAC44501.1 | 0 | 30 | 839 | 30 | 839 | beta-galactosidase [Fragaria x ananassa] |
EMBL | CBI16297.1 | 0 | 7 | 840 | 8 | 846 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002317239.1 | 0 | 1 | 841 | 6 | 849 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521428.1 | 0 | 1 | 841 | 1 | 841 | beta-galactosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 0 | 27 | 338 | 5 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3d3a_A | 0.003 | 532 | 723 | 431 | 578 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 2e-37 | 29 | 347 | 10 | 339 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 0.002 | 479 | 662 | 392 | 571 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 2e-37 | 29 | 347 | 10 | 339 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |