y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29917.m001983 |
Family | GH28 |
Protein Properties | Length: 466 Molecular Weight: 50271.9 Isoelectric Point: 6.3013 |
Chromosome | Chromosome/Scaffold: 29917 Start: 316970 End: 319570 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 102 | 437 | 0 |
AACKVEASTIVVPSGSMFLVHPISFSGPACAENIVFQLDGKIIAPTSATAWGSGLLQWIEFTKLKGITIKGKGIIDGQGSVWWNDLPAYSPHSEVAGELN AKMPGTKPTALRFYGSTDVTVTGITIQNSPQTHLKFDDCTGVQVSEFTAASPENSPNTDGIHLQNSRDVVIYSSDLSCGDDCVSIQTGCSNVYIHNVNCG PGHGISIGGLGKDNTKACVSNVTVRDVQMQNTLTGVRIKTWQGGSGSVQGVTFSNIQVSGVETPIMIDQFYCDGSKCRNESSAVAVSGINYMNIKGTYTR NPLHLACSDNSPCTGVSLETIELKSVGENSQPFCWN |
Full Sequence |
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Protein Sequence Length: 466 Download |
MGCFTLEKLS LIIILIALFL LSAKFETCYA REGKYWRQSR DVLMMNKEKA HDGRSLSMVM 60 DSNYTWSDEK GQSLATFNVL DYGAKGDGRT DDTKAFEAAW IAACKVEAST IVVPSGSMFL 120 VHPISFSGPA CAENIVFQLD GKIIAPTSAT AWGSGLLQWI EFTKLKGITI KGKGIIDGQG 180 SVWWNDLPAY SPHSEVAGEL NAKMPGTKPT ALRFYGSTDV TVTGITIQNS PQTHLKFDDC 240 TGVQVSEFTA ASPENSPNTD GIHLQNSRDV VIYSSDLSCG DDCVSIQTGC SNVYIHNVNC 300 GPGHGISIGG LGKDNTKACV SNVTVRDVQM QNTLTGVRIK TWQGGSGSVQ GVTFSNIQVS 360 GVETPIMIDQ FYCDGSKCRN ESSAVAVSGI NYMNIKGTYT RNPLHLACSD NSPCTGVSLE 420 TIELKSVGEN SQPFCWNTYG ELRSATVPPV NCLQTGKSRK PYIVNC 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-66 | 77 | 454 | 387 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-66 | 108 | 424 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 2.0e-69 | 77 | 441 | 371 | + polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-74 | 72 | 425 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-87 | 77 | 449 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO24262.1 | 0 | 2 | 461 | 4 | 470 | putative style polygalacturonase [Turnera subulata] |
GenBank | ABD62081.1 | 0 | 2 | 461 | 4 | 470 | putative style polygalacturonase [Turnera subulata] |
DDBJ | BAH56488.1 | 0 | 1 | 462 | 2 | 496 | polygalacturonase 1 [Prunus persica] |
RefSeq | XP_002298533.1 | 0 | 67 | 466 | 3 | 386 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521450.1 | 0 | 1 | 466 | 1 | 466 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-25 | 170 | 372 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-24 | 76 | 441 | 20 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 5e-24 | 168 | 412 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-24 | 168 | 412 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-24 | 168 | 412 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |