Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29986.m001649 |
Family | GH28 |
Protein Properties | Length: 272 Molecular Weight: 28953.4 Isoelectric Point: 6.4999 |
Chromosome | Chromosome/Scaffold: 29986 Start: 418936 End: 420033 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 40 | 259 | 0 |
QSIKFQGVSNSVVNGINSINSKFLHFHITYSSSFTAYNLKITAPGDSPNTDGMHISETNGVNVSKSTIGTGDDCISIGAGVTDATFSEITCGPGHGISVG SLGKYQNEKDVNGIMVTNCTLSKTNNGVRIKSWPGSPPSAASSITFQDIIMDSVENPILIDQNYGSHSSEPSRVKISDVHYKNIGGTSASNVAVSLTSSS SNPCQGIELADIDLTYAGTN |
Full Sequence |
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Protein Sequence Length: 272 Download |
MAWFLLVEEP LTDRALLSGS SMIARKTAVA PHFRPAWCFQ SIKFQGVSNS VVNGINSINS 60 KFLHFHITYS SSFTAYNLKI TAPGDSPNTD GMHISETNGV NVSKSTIGTG DDCISIGAGV 120 TDATFSEITC GPGHGISVGS LGKYQNEKDV NGIMVTNCTL SKTNNGVRIK SWPGSPPSAA 180 SSITFQDIIM DSVENPILID QNYGSHSSEP SRVKISDVHY KNIGGTSASN VAVSLTSSSS 240 NPCQGIELAD IDLTYAGTNG KRFNHISFIF EC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 4.0e-47 | 64 | 255 | 196 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-47 | 63 | 253 | 194 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-49 | 66 | 263 | 205 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-58 | 61 | 258 | 201 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-66 | 61 | 260 | 207 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 4e-17 | 47 | 264 | 112 | 332 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 1ib4_A | 4e-17 | 47 | 264 | 112 | 332 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 1ia5_A | 4e-17 | 47 | 264 | 112 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 4e-16 | 61 | 264 | 101 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-16 | 61 | 264 | 101 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Sequence Alignments (This image is cropped. Click for full image.) |
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