y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30005.m001254 |
Family | CE10 |
Protein Properties | Length: 775 Molecular Weight: 87256.4 Isoelectric Point: 8.2353 |
Chromosome | Chromosome/Scaffold: 30005 Start: 96880 End: 102253 |
Description | HhH-GPD base excision DNA repair family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE10 | 523 | 771 | 0 |
SIDTGVKARVFLPKLDGSSRRLPLLVHYHGGGFCAGSAFDIVTKKFLTSMVIQANVIAISIDYRLAPEHLLPIGYDDSWAGLQWIASHSNGLGPEPWLNE HVDFGRVFLTGESAGANIAHYVAVQAGVIGLAGVKIKGLLMVHPFFGGKEEDKMYKYLCPTSSGCDNDPKLNPGRDPNLSKMGCDEVLVCVAEKDWLRNR GEAYYKNLDNSGWGGKVKLLETKGEDHCFHLFTTNSASDALFKRLVDFI |
Full Sequence |
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Protein Sequence Length: 775 Download |
MEDSRKLKNK KRNVQLISKE QEIVVDIEDI FIDKETQKIR ESLLEWYDQN QRQLPWRRQK 60 TTNPSQESEE EKEKRAYGIW VSEVMLQQTR VQTVIDYYNR WMLKWPTIHH LAQASLEEVN 120 EIWAGLGYYR RARFLLEGAK MIVAGGGFPN TVSSLRKVPG IGDYTAGAIA SIAFKEVVPV 180 VDGNVVRVLT RLRAISANPK DSMTVKKLWK LAAQLVDPCR PGDFNQSLME LGATVCAPSN 240 PSCSSCPVSS QCRVLSISNQ DKSILVTDYP TKVVKVKPKH EFSAVCVVEI LGSCGPVDNQ 300 KTDSKFLLVK RPDDGLLAGL WEFPTCRLDK EADLITRRNE IDHFMKKSFR LDPEKTYSMV 360 LREDIGEFVH IFTHIRLKVY VDLLVIRLKG GMSQLFRKQE KEATNWKCVE KKALPNLGLT 420 SGVRKVIWLH VPPTSLLASP SLDFQFHTHL YCFYIEPPSD SSHKQNSPLS SPMASTTNET 480 AHEFPPFFKV FKDGRIERYM VMDHVPAGLD PETGVQFKDV TVSIDTGVKA RVFLPKLDGS 540 SRRLPLLVHY HGGGFCAGSA FDIVTKKFLT SMVIQANVIA ISIDYRLAPE HLLPIGYDDS 600 WAGLQWIASH SNGLGPEPWL NEHVDFGRVF LTGESAGANI AHYVAVQAGV IGLAGVKIKG 660 LLMVHPFFGG KEEDKMYKYL CPTSSGCDND PKLNPGRDPN LSKMGCDEVL VCVAEKDWLR 720 NRGEAYYKNL DNSGWGGKVK LLETKGEDHC FHLFTTNSAS DALFKRLVDF IIQKE 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00056 | ENDO3c | 2.0e-37 | 77 | 232 | 162 | + endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases | ||
PRK10880 | PRK10880 | 1.0e-44 | 37 | 377 | 353 | + adenine DNA glycosylase; Provisional | ||
pfam07859 | Abhydrolase_3 | 5.0e-50 | 547 | 753 | 227 | + alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes. | ||
TIGR01084 | mutY | 3.0e-70 | 38 | 324 | 291 | + A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY [DNA metabolism, DNA replication, recombination, and repair]. | ||
COG1194 | MutY | 3.0e-89 | 38 | 427 | 393 | + A/G-specific DNA glycosylase [DNA replication, recombination, and repair] |
Gene Ontology | |
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GO Term | Description |
GO:0003677 | DNA binding |
GO:0004519 | endonuclease activity |
GO:0006284 | base-excision repair |
GO:0008152 | metabolic process |
GO:0016787 | hydrolase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN71629.1 | 0 | 4 | 426 | 556 | 1003 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_193010.2 | 0 | 26 | 436 | 118 | 534 | adenine-DNA glycosylase-related / MYH-related [Arabidopsis thaliana] |
RefSeq | XP_002265027.1 | 0 | 4 | 426 | 53 | 478 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002321221.1 | 0 | 18 | 427 | 28 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524570.1 | 0 | 1 | 775 | 1 | 775 | A/G-specific adenine glycosylase muty, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3n5n_Y | 0 | 30 | 262 | 8 | 238 | X Chain X, Crystal Structure Analysis Of The Catalytic Domain And Interdomain Connector Of Human Muty Homologue |
PDB | 3n5n_X | 0 | 30 | 262 | 8 | 238 | X Chain X, Crystal Structure Analysis Of The Catalytic Domain And Interdomain Connector Of Human Muty Homologue |
PDB | 3g0q_A | 0 | 36 | 385 | 2 | 314 | A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna |
PDB | 3fsq_A | 0 | 36 | 385 | 13 | 325 | A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna |
PDB | 3fsp_A | 0 | 36 | 385 | 13 | 325 | A Chain A, Muty Adenine Glycosylase Bound To A Transition State Analog (1n) Paired With Dg In Duplexed Dna |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC899987 | 295 | 478 | 771 | 0 |
DY293550 | 295 | 478 | 771 | 0 |
DY293173 | 281 | 478 | 758 | 0 |
FC900869 | 286 | 473 | 758 | 0 |
DY294187 | 300 | 473 | 771 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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