Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30042.m000468 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 41285.6 Isoelectric Point: 8.3613 |
Chromosome | Chromosome/Scaffold: 30042 Start: 58424 End: 60357 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 382 | 0 |
WTQACGSTKPPTIYVPSGKFFLKDLSFGGPCKNNAILFRIDGTLVAPSDYKVIGNAGYWLYFQHVNGVTISGGILDGQGSGLWACKASGKNCPSGATSLG FSNSKNIAINGLTSQNSQMFHIVINGCQNVKVQGVTVSASGDSPNTDGIHVQQSGGVTILNSKIRTGDDCISIGPGATNLWIENIACGPGHGISIGSLGK DLQEAGVQNVTVKTVTFTGTQNGVRIKSWGRPSSGFARNILFQHAIMTNVQNPIVIDQNYCPDNKNCPGQESGVKISGVTYQDIHGTSATEVAVKFDCSK KEPCTGIKLEDVKLTYKNQPADASCNNADGT |
Full Sequence |
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Protein Sequence Length: 393 Download |
MANTRQSSFS FLALLILLFT SSLATAAQYN VLSYGAKPDG RTDSTKAFLA AWTQACGSTK 60 PPTIYVPSGK FFLKDLSFGG PCKNNAILFR IDGTLVAPSD YKVIGNAGYW LYFQHVNGVT 120 ISGGILDGQG SGLWACKASG KNCPSGATSL GFSNSKNIAI NGLTSQNSQM FHIVINGCQN 180 VKVQGVTVSA SGDSPNTDGI HVQQSGGVTI LNSKIRTGDD CISIGPGATN LWIENIACGP 240 GHGISIGSLG KDLQEAGVQN VTVKTVTFTG TQNGVRIKSW GRPSSGFARN ILFQHAIMTN 300 VQNPIVIDQN YCPDNKNCPG QESGVKISGV TYQDIHGTSA TEVAVKFDCS KKEPCTGIKL 360 EDVKLTYKNQ PADASCNNAD GTASGFVQPS SCL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-93 | 56 | 384 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-96 | 30 | 389 | 370 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-100 | 31 | 393 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-109 | 29 | 392 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-151 | 29 | 393 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 393 | 1 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
RefSeq | XP_002309718.1 | 0 | 1 | 393 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529089.1 | 0 | 5 | 393 | 4 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 1 | 393 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 64 | 366 | 57 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 5e-18 | 114 | 376 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 5e-18 | 114 | 376 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1rmg_A | 3e-16 | 30 | 365 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 6e-16 | 122 | 366 | 77 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |