Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30042.m000470 |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 41032.7 Isoelectric Point: 4.6259 |
Chromosome | Chromosome/Scaffold: 30042 Start: 78200 End: 79657 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 383 | 0 |
WADACGSNAPATLYVPAGRFSLGKVEFQGPCKNSAIEVSIDGTLMAPSDYSVIGDENNWIIFVHVDGVTVSGGVLDGRGSGLWSCKSSGKNCPTGATSLE FSNSKNIEINGLASEDSQKFHIVINSCQNVKVQSVKVSADGDSPNTDGIHVEGSSSVTILNSKIGTGDDCVSIGPGTTNLWVENVACGPGHGISIGSLGK DNDEAGVQNVTVKTTTFSGTQNGVRIKSWGRPSSGFAKNILFQHAVMTNVQNPIVIDQNYCPGESNCPGQESGVQISDVTYQDIHGSSATEVAVKFDCSR STPCTGIELEDVKLTYNNKPAEASCINAAGT |
Full Sequence |
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Protein Sequence Length: 394 Download |
MEKTMTFTFL LLIVFAISSS PAMSGPAQLY NVQNYGAKPD GSTDSTKAFL AAWADACGSN 60 APATLYVPAG RFSLGKVEFQ GPCKNSAIEV SIDGTLMAPS DYSVIGDENN WIIFVHVDGV 120 TVSGGVLDGR GSGLWSCKSS GKNCPTGATS LEFSNSKNIE INGLASEDSQ KFHIVINSCQ 180 NVKVQSVKVS ADGDSPNTDG IHVEGSSSVT ILNSKIGTGD DCVSIGPGTT NLWVENVACG 240 PGHGISIGSL GKDNDEAGVQ NVTVKTTTFS GTQNGVRIKS WGRPSSGFAK NILFQHAVMT 300 NVQNPIVIDQ NYCPGESNCP GQESGVQISD VTYQDIHGSS ATEVAVKFDC SRSTPCTGIE 360 LEDVKLTYNN KPAEASCINA AGTASGVLQP SSCL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-96 | 57 | 385 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-99 | 28 | 394 | 375 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-101 | 31 | 390 | 367 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-114 | 5 | 393 | 408 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-142 | 4 | 394 | 392 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309716.1 | 0 | 10 | 394 | 10 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002309718.1 | 0 | 1 | 394 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310385.1 | 0 | 10 | 394 | 16 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 3 | 394 | 5 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529092.1 | 0 | 1 | 394 | 1 | 394 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 151 | 367 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 8e-21 | 19 | 366 | 10 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 0.000000000000001 | 116 | 377 | 96 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.000000000000001 | 116 | 377 | 96 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 0.00000000000002 | 124 | 377 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |