| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 30042.m000471 |
| Family | GH28 |
| Protein Properties | Length: 321 Molecular Weight: 34623.4 Isoelectric Point: 9.0168 |
| Chromosome | Chromosome/Scaffold: 30042 Start: 82331 End: 84707 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 172 | 308 | 3.20001e-41 |
| IGSLGKEFHEPGVQNVTVKTVTFTGTENGVRIKAWARPSTGFARNISFQNAIMKNVHNPIVIDQNYCPHKRNCPHQGSGIKISNVCYQNIYGTSATEVAM RFDCSKKNPCTGIRLQNVVLTYKNQPADASCTNADGT | |||
| Full Sequence |
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| Protein Sequence Length: 321 Download |
| MALPVSTRLV VLAIIFVFVT SSSFATAAIY NVSSYGAKPD GTTDSTEAFI AAWKQACSSL 60 EPTTIYVPLG RFLLRNVAFR GKCRNNAIQI RIDGMLVAPS DYRVIGHSEN WLLFENVDGV 120 SFFGGVLDAQ GTGLWNCKAT AKNCPSGATS LRFTNANNIE IKGLSSLNSQ FIGSLGKEFH 180 EPGVQNVTVK TVTFTGTENG VRIKAWARPS TGFARNISFQ NAIMKNVHNP IVIDQNYCPH 240 KRNCPHQGSG IKISNVCYQN IYGTSATEVA MRFDCSKKNP CTGIRLQNVV LTYKNQPADA 300 SCTNADGTAS GLVNPASCLT V |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-23 | 8 | 171 | 179 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02188 | PLN02188 | 6.0e-37 | 172 | 318 | 151 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 8.0e-39 | 29 | 310 | 350 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 3.0e-39 | 5 | 170 | 168 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 7.0e-56 | 172 | 319 | 149 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26511.1 | 0 | 22 | 319 | 43 | 416 | polygalacturonase precursor [Cucumis melo] |
| EMBL | CAB75804.1 | 0 | 27 | 319 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | XP_002529088.1 | 0 | 11 | 320 | 6 | 307 | conserved hypothetical protein [Ricinus communis] |
| RefSeq | XP_002529089.1 | 0 | 6 | 319 | 7 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529093.1 | 0 | 1 | 321 | 1 | 321 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0000006 | 174 | 292 | 254 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.000003 | 31 | 290 | 22 | 270 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.0006 | 74 | 302 | 108 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0006 | 74 | 302 | 108 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Transmembrane Domains | ||||
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| Start | End | |||
| 9 | 31 | |||
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 27 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GT978788 | 207 | 1 | 205 | 0 |
| EE255801 | 208 | 116 | 319 | 0 |
| JG080212 | 148 | 172 | 319 | 0 |
| JG076996 | 148 | 172 | 319 | 0 |
| JG078849 | 148 | 172 | 319 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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