Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30042.m000472 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 41540.5 Isoelectric Point: 9.1837 |
Chromosome | Chromosome/Scaffold: 30042 Start: 85657 End: 89335 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 379 | 0 |
WSSACRSTGPATVSVPRGGFLIKPIVFSGPCKNEILFRIDGKIVAPADYWSFGKSGFWILFYKVSRVTIHGGTIDAKGAGFWACRKAGMVCPPGARSMSF LGSNDIVVSGLTSINSQMFHISVDQSHNIILQNLNILAPSLSPNTDGVHVQSSTGITIRNSTIRTGDDCISLGPGSKNIWIQTIACGPGHGISIGSLAEH TNEDGVENVTVTGAIFTATQNGVRIKSWGRPTTGYAKNIVFQNIIMKNAYNPIIIDQKYCPSGHGCPNQDSGVKISGVAYKNINGTSASKVAINFVCSSS TPCKGLKLQNIELTYLSKGAAMSSCNNANGS |
Full Sequence |
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Protein Sequence Length: 390 Download |
MASILFYCAL FLLFFSFSLQ QSNADYNVIR FGAKPDGKTD STEAFVRAWS SACRSTGPAT 60 VSVPRGGFLI KPIVFSGPCK NEILFRIDGK IVAPADYWSF GKSGFWILFY KVSRVTIHGG 120 TIDAKGAGFW ACRKAGMVCP PGARSMSFLG SNDIVVSGLT SINSQMFHIS VDQSHNIILQ 180 NLNILAPSLS PNTDGVHVQS STGITIRNST IRTGDDCISL GPGSKNIWIQ TIACGPGHGI 240 SIGSLAEHTN EDGVENVTVT GAIFTATQNG VRIKSWGRPT TGYAKNIVFQ NIIMKNAYNP 300 IIIDQKYCPS GHGCPNQDSG VKISGVAYKN INGTSASKVA INFVCSSSTP CKGLKLQNIE 360 LTYLSKGAAM SSCNNANGST SGLVIPRSCF |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-90 | 27 | 387 | 368 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 2.0e-91 | 25 | 390 | 372 | + polygalacturonase | ||
PLN02793 | PLN02793 | 8.0e-105 | 28 | 390 | 370 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-107 | 26 | 389 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 6.0e-155 | 26 | 390 | 365 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002275740.1 | 0 | 6 | 389 | 8 | 388 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331632.1 | 0 | 4 | 390 | 5 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 6 | 390 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 1 | 390 | 1 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 1 | 390 | 1 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-17 | 117 | 362 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000003 | 118 | 375 | 76 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000003 | 118 | 375 | 76 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000003 | 118 | 375 | 76 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000003 | 118 | 375 | 76 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |