| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 30042.m000473 |
| Family | GH28 |
| Protein Properties | Length: 390 Molecular Weight: 42101.4 Isoelectric Point: 10.0611 |
| Chromosome | Chromosome/Scaffold: 30042 Start: 92120 End: 93997 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 51 | 379 | 0 |
| SACRSTGPATVYVPKGSFLVKPVEFSGPCKNKISFWIDGKIIAPTNYWSFGTSGFWILFYKVSRVTIHGGTLDARGASFWACKRAGKVCPPGARSISFVG SSDVVVSGLTSMNSQMFHIAIHKSHNIVLQKLKIIAPSLSPNTDGLHMQSSTGITIKDSTITTGDDCISLGPGSQNIWIQRIACGPGHGISIGSLAQYKN EEGVQNVTVANVVFTGTQNGVRIKSWERPSTAFVKNILFRDIVMKNTYNPIIIDQEYCPNGRGCPNQSSGVKISGVTYKNIRGTSAMRVAMNFLCSSSNP CRGLKLQNIKLTYLSRGTATSSCIHAHGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 390 Download |
| MSKIMIYCAL FLIFFSSSFH ESNAAYNVVS FGAKPDGKSD SSQAFVRAWL SACRSTGPAT 60 VYVPKGSFLV KPVEFSGPCK NKISFWIDGK IIAPTNYWSF GTSGFWILFY KVSRVTIHGG 120 TLDARGASFW ACKRAGKVCP PGARSISFVG SSDVVVSGLT SMNSQMFHIA IHKSHNIVLQ 180 KLKIIAPSLS PNTDGLHMQS STGITIKDST ITTGDDCISL GPGSQNIWIQ RIACGPGHGI 240 SIGSLAQYKN EEGVQNVTVA NVVFTGTQNG VRIKSWERPS TAFVKNILFR DIVMKNTYNP 300 IIIDQEYCPN GRGCPNQSSG VKISGVTYKN IRGTSAMRVA MNFLCSSSNP CRGLKLQNIK 360 LTYLSRGTAT SSCIHAHGST AGVVIPRSCF |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02218 | PLN02218 | 6.0e-86 | 12 | 387 | 383 | + polygalacturonase ADPG |
| pfam00295 | Glyco_hydro_28 | 2.0e-89 | 53 | 373 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02793 | PLN02793 | 4.0e-102 | 28 | 390 | 370 | + Probable polygalacturonase |
| PLN02188 | PLN02188 | 5.0e-106 | 4 | 389 | 399 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02155 | PLN02155 | 9.0e-153 | 11 | 390 | 380 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002275740.1 | 0 | 10 | 389 | 4 | 388 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002331632.1 | 0 | 4 | 390 | 5 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 1 | 390 | 1 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529094.1 | 0 | 1 | 390 | 1 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529095.1 | 0 | 1 | 390 | 1 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-22 | 117 | 362 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 4e-16 | 118 | 362 | 76 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-16 | 118 | 362 | 76 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-16 | 118 | 362 | 76 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-16 | 118 | 362 | 76 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
