y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30042.m000474 |
Family | GH28 |
Protein Properties | Length: 388 Molecular Weight: 41416.4 Isoelectric Point: 9.7803 |
Chromosome | Chromosome/Scaffold: 30042 Start: 98195 End: 100358 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 376 | 0 |
WAAACSSATASTIYVPKGRYLIKAVEFRGPCKNRITVKIDGTIVAPSDYRALGNSGYWILFIQVNKISVLGGTLDAKGAAFWACRASGKSCPVGARSVTF NWANNVLISGLTSINSQLTHLVINSCNNVEVRNVKLVAPDQSPNTDGIHVQTSTGVTITGSTLQTGDDCISIGPGTRNLHMSRIKCGPGHGVSIGSLGRQ FSEDGVQNITLTDALFTGSDNGVRIKTWARPSTSFVRNILFQNIIMRNVKNPIIIDQDYCPDNIGCPNKSSGVKISQVTYKNIQGTSGTPQAVTFECSSS NPCKGIRLHDIKLTYMNKAATSSCKNIAG |
Full Sequence |
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Protein Sequence Length: 388 Download |
MANKFAISSV LSFFFLFHLS NAASYNVLKF GAKPDGKKDS TQPFLKAWAA ACSSATASTI 60 YVPKGRYLIK AVEFRGPCKN RITVKIDGTI VAPSDYRALG NSGYWILFIQ VNKISVLGGT 120 LDAKGAAFWA CRASGKSCPV GARSVTFNWA NNVLISGLTS INSQLTHLVI NSCNNVEVRN 180 VKLVAPDQSP NTDGIHVQTS TGVTITGSTL QTGDDCISIG PGTRNLHMSR IKCGPGHGVS 240 IGSLGRQFSE DGVQNITLTD ALFTGSDNGV RIKTWARPST SFVRNILFQN IIMRNVKNPI 300 IIDQDYCPDN IGCPNKSSGV KISQVTYKNI QGTSGTPQAV TFECSSSNPC KGIRLHDIKL 360 TYMNKAATSS CKNIAGASSG LAIPESCL 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-88 | 26 | 385 | 367 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-90 | 60 | 374 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-92 | 27 | 388 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-103 | 25 | 387 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-163 | 25 | 388 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 4 | 388 | 3 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 4 | 388 | 3 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 1 | 388 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 1 | 388 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 1 | 388 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 6e-22 | 50 | 374 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 6e-22 | 50 | 374 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 6e-22 | 50 | 374 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 6e-22 | 50 | 374 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 6e-22 | 50 | 374 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |