Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30042.m000475 |
Family | GH28 |
Protein Properties | Length: 388 Molecular Weight: 41967.9 Isoelectric Point: 8.8901 |
Chromosome | Chromosome/Scaffold: 30042 Start: 126769 End: 129188 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 377 | 0 |
AAACNSPTASTVYVPKGRYLIKAIEFRGPCKRRITVKIDGSIVAPMDYRALGNSGYWILFAKVNQIAVFGGTLDAKGAAFWACRASGKSCPVGARSITFD WTNDVIISGLRSINSQTMHLVINNSNNVQVRNVKLIAPDQSPNTDGIHVQTSTGVTITGSTLQTGDDCVSIGPGTKNLLMSHIKCGPGHGISIGSLGREY DEDGVQNITLTDAVFIGSDNGVRIKTWARPSTSFVRNVLFQNIIMMNVKNPIIIDQDYCPDNIGCPNQHSGVKISQITYKNIQGTSRSPQAVTFECSPSN PCREIELHDIKLTYMNKAATSSCKNIAGT |
Full Sequence |
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Protein Sequence Length: 388 Download |
MAYKLAISFA LSFFFIFHFS NAASYNVLNF GAKPDGKTDS TQPFLKTWAA ACNSPTASTV 60 YVPKGRYLIK AIEFRGPCKR RITVKIDGSI VAPMDYRALG NSGYWILFAK VNQIAVFGGT 120 LDAKGAAFWA CRASGKSCPV GARSITFDWT NDVIISGLRS INSQTMHLVI NNSNNVQVRN 180 VKLIAPDQSP NTDGIHVQTS TGVTITGSTL QTGDDCVSIG PGTKNLLMSH IKCGPGHGIS 240 IGSLGREYDE DGVQNITLTD AVFIGSDNGV RIKTWARPST SFVRNVLFQN IIMMNVKNPI 300 IIDQDYCPDN IGCPNQHSGV KISQITYKNI QGTSRSPQAV TFECSPSNPC REIELHDIKL 360 TYMNKAATSS CKNIAGTSSG LIIPESCL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-94 | 26 | 385 | 367 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-94 | 52 | 374 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-98 | 27 | 388 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-105 | 25 | 387 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-169 | 25 | 388 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 4 | 388 | 3 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 4 | 388 | 3 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 1 | 388 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 1 | 388 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 1 | 388 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 9e-23 | 50 | 374 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-23 | 50 | 374 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 9e-23 | 50 | 374 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 9e-23 | 50 | 374 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 9e-23 | 50 | 374 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |