Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30042.m000476 |
Family | GH28 |
Protein Properties | Length: 387 Molecular Weight: 41435.4 Isoelectric Point: 9.3472 |
Chromosome | Chromosome/Scaffold: 30042 Start: 134582 End: 137200 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 374 | 0 |
WAAACSSATASTISVPKGRYLIKAIEFRGPCKSRITVKIDGTIEAPVDYRALGNSGYWILFIQVNQISVLGGTLDAKGAGFWACRASGKSCPVGARSITF NWANNVIISGLTSINSQTMHLVINSCNNVQVRNVKLIAPDQSPNTDGIHVQTSTGVTITGSTLQTGDDCISIGPGTRNLLMSHIKCGPGHGISIGSLGRQ FNEDGVQNITLTDAVFTGSDNGVRIKTWARPSTSFVRNVLFQNLIMRNVKNPIIIDQDYCPDNIGCPNQNSGVKISQVMYKNIQGTSRSPQAVTFECSPS NPCKEIRLHDIKLTYMNKAATSSCKNIG |
Full Sequence |
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Protein Sequence Length: 387 Download |
MANKIAIMLA LSFFLFQLSN AASYNVLKFG AKPDGKTDST QPFLKAWAAA CSSATASTIS 60 VPKGRYLIKA IEFRGPCKSR ITVKIDGTIE APVDYRALGN SGYWILFIQV NQISVLGGTL 120 DAKGAGFWAC RASGKSCPVG ARSITFNWAN NVIISGLTSI NSQTMHLVIN SCNNVQVRNV 180 KLIAPDQSPN TDGIHVQTST GVTITGSTLQ TGDDCISIGP GTRNLLMSHI KCGPGHGISI 240 GSLGRQFNED GVQNITLTDA VFTGSDNGVR IKTWARPSTS FVRNVLFQNL IMRNVKNPII 300 IDQDYCPDNI GCPNQNSGVK ISQVMYKNIQ GTSRSPQAVT FECSPSNPCK EIRLHDIKLT 360 YMNKAATSSC KNIGGTSSGL AIPESCL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-90 | 26 | 387 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-90 | 1 | 384 | 391 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-92 | 61 | 373 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-103 | 19 | 386 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-165 | 7 | 387 | 383 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 1 | 387 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 5 | 387 | 6 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 1 | 387 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 1 | 387 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 1 | 387 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 7e-22 | 49 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-22 | 49 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-22 | 49 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-22 | 49 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 7e-22 | 49 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |