Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30075.m001145 |
Family | AA7 |
Protein Properties | Length: 510 Molecular Weight: 57616.8 Isoelectric Point: 6.2521 |
Chromosome | Chromosome/Scaffold: 30075 Start: 118735 End: 120267 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 48 | 504 | 0 |
NLRFNSSASPKPFFIVTPTHSSHIQASIICSKIHGLELRIRSGGHDFDGLSYISNLPFIILDMFNMRSVSIDMEDESAWIESGATLGEVYYWIAKRSGVH GYPAGVCPTVGVGGHLSGGGYGNLMRKYGLSVDNVVDAVVIDADGRVLDREAMGEDLFWAIRGGGGASFGVIVSWKIKLVLVPEIVTVFRVEKTLEEGAS DIVYQWQQVADKIHKDLFIRVVLNRAVRHGQETVKAKFNALFLGNAERLVGLMDEKFPELGLLHKDCKEMSWIESVLFWSNYPIGTSVDVLLERHSQAEK FLKRKSDYVQEPISKQDLEGIWKKMIELKQAALTLNPYGGRMSEIPECETPFPHRAGNIYKIQYAVSWKDASVEAEEQNLDIIRKMYDYMTPFVSKSPRC SYLNYRDVDLGVNEVGNESYEEASRWGYKYFKGNFDRLVEVKTKVDPCNFFRYEQSI |
Full Sequence |
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Protein Sequence Length: 510 Download |
MAALDLTQEK TILQCLSTHS ITNPPISEVT YFPSNPKYTS ILQSYIRNLR FNSSASPKPF 60 FIVTPTHSSH IQASIICSKI HGLELRIRSG GHDFDGLSYI SNLPFIILDM FNMRSVSIDM 120 EDESAWIESG ATLGEVYYWI AKRSGVHGYP AGVCPTVGVG GHLSGGGYGN LMRKYGLSVD 180 NVVDAVVIDA DGRVLDREAM GEDLFWAIRG GGGASFGVIV SWKIKLVLVP EIVTVFRVEK 240 TLEEGASDIV YQWQQVADKI HKDLFIRVVL NRAVRHGQET VKAKFNALFL GNAERLVGLM 300 DEKFPELGLL HKDCKEMSWI ESVLFWSNYP IGTSVDVLLE RHSQAEKFLK RKSDYVQEPI 360 SKQDLEGIWK KMIELKQAAL TLNPYGGRMS EIPECETPFP HRAGNIYKIQ YAVSWKDASV 420 EAEEQNLDII RKMYDYMTPF VSKSPRCSYL NYRDVDLGVN EVGNESYEEA SRWGYKYFKG 480 NFDRLVEVKT KVDPCNFFRY EQSIPSLEAS |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02900 | PLN02900 | 0.009 | 266 | 307 | 45 | + alanyl-tRNA synthetase | ||
COG0277 | GlcD | 9.0e-8 | 71 | 251 | 193 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 1.0e-13 | 59 | 196 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 3.0e-18 | 448 | 505 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 9 | 507 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 9 | 507 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3vte_A | 0 | 10 | 507 | 5 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_B | 0 | 24 | 507 | 20 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_A | 0 | 24 | 507 | 20 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
Sequence Alignments (This image is cropped. Click for full image.) |
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